RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	DYNLRB2	Q8TF09	96 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	DPH3	Q96FX2	82 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	LIMD2	Q9BT23	127 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	SNRNP25	Q9BV90	132 aa	Known RBP	0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	TMEM14C	Q9P0S9	112 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	SNURF	Q9Y675	71 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	BAHCC1	Q9P281	2608 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	ALPK3	Q96L96	1907 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	RP1	P56715	2156 aa		0.93	□□□□□ -2.26
CHD3-217	ENST00000574022	CFTR	P13569	1480 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	BCORL1	Q5H9F3	1711 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	FN1	P02751	2386 aa	Known RBP	0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	COL5A1	P20908	1838 aa	Predicted RBP	0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	TNRC6B	Q9UPQ9	1833 aa	Known RBP	0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	ATG2A	Q2TAZ0	1938 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	LOC100130705	A0A1B0GUX0	176 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	TMEM30CP	A0ZSE6	113 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	JMJD7-PLA2G4B	H0Y9G9	81 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	INE1	O15225	51 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	CCL25	O15444	150 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	PITX3	O75364	302 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	AKAIN1	P0CW23	69 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	IL7	P13232	177 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	POLR2J	P52435	117 aa	Known RBP	0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	BTG2	P78543	158 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	PCOTH	Q58A44	107 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	SPRN	Q5BIV9	151 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	PPDPFL	Q8WWR9	84 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	PP6455	Q8WZ26	134 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	C12orf57	Q99622	126 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	TCEAL7	Q9BRU2	100 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	RERGL	Q9H628	205 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	CASZ1	Q86V15	1759 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	ICE1	Q9Y2F5	2266 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	CACNA1G	O43497	2377 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	MYH9	P35579	1960 aa	Known RBP	0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	MYOM2	P54296	1465 aa		0.92	□□□□□ -2.26
CHD3-217	ENST00000574022	ADGRB2	O60241	1585 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	PTPRD	P23468	1912 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	COL4A1	P02462	1669 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	QRICH2	Q9H0J4	1663 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	CR1	P17927	2039 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	PLXNA2	O75051	1894 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	EML5	Q05BV3	1969 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	LOC110117498	A0A087WWA1	95 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	IGLV3-32	A0A0A0MS00	114 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	TRBV6-7	A0A0A0MS04	114 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	IGKV3D-7	A0A0C4DH55	119 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	IGKV3OR2-268	A0A0C4DH90	116 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022		A0A0J9YY99	117 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	SPAAR	A0A1B0GVQ0	90 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	ATP6V1G2-DDX39B	F2Z307	99 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022		M0R2N4	97 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	CORT	O00230	105 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	SNAPC5	O75971	98 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	IGKC	P01834	107 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	IL5	P05113	134 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	PRB4	P10163	310 aa	Predicted RBP	0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	HIST1H1D	P16402	221 aa	Known RBP	0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	RHOH	Q15669	191 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	OR2T2	Q6IF00	324 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	KRTAP5-11	Q6L8G4	156 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	CSAG1	Q6PB30	78 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	UNQ6190/PRO20217	Q6UXQ8	127 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	PP632	Q6XCG6	107 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	LINC00322	Q6ZN03	302 aa	Predicted RBP	0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	PLPP5	Q8NEB5	264 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	SPTSSA	Q969W0	71 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	SEC11C	Q9BY50	192 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	WFDC10A	Q9H1F0	79 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	NAA60	Q9H7X0	242 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	TMEM242	Q9NWH2	141 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	SCN3B	Q9NY72	215 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	ZFP30	Q9Y2G7	519 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	BAZ2B	Q9UIF8	2168 aa	Known RBP	0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	A2ML1	A8K2U0	1454 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	MED12L	Q86YW9	2145 aa		0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	HEATR1	Q9H583	2144 aa	Known RBP	0.91	□□□□□ -2.26
CHD3-217	ENST00000574022	MCM3AP	O60318	1980 aa		0.9	□□□□□ -2.26
CHD3-217	ENST00000574022	DOCK10	Q96BY6	2186 aa		0.9	□□□□□ -2.26
CHD3-217	ENST00000574022	MUC4	Q99102	2169 aa		0.9	□□□□□ -2.26
CHD3-217	ENST00000574022	PHRF1	Q9P1Y6	1649 aa	Known RBP	0.9	□□□□□ -2.26
CHD3-217	ENST00000574022	AKAP11	Q9UKA4	1901 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	TRAV23DV6	A0A075B6W5	121 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	NUPR2	A6NF83	97 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	CCDC179	H3BU77	68 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	KLF7	O75840	302 aa	Predicted RBP	0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	IGKV2D-40	P01614	121 aa	Predicted RBP	0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	IGLV3-1	P01715	115 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	FREM3	P0C091	2139 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	PIRT	P0C851	137 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	PIP	P12273	146 aa	Predicted RBP	0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	GNG4	P50150	75 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	KRTAP12-1	P59990	96 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	IQCJ	Q1A5X6	159 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	KRTAP6-3	Q3LI67	103 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	GDF5OS	Q5U4N7	250 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	SPANXN1	Q5VSR9	72 aa		0.9	□□□□□ -2.27
CHD3-217	ENST00000574022	LYPD5	Q6UWN5	251 aa		0.9	□□□□□ -2.27

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