RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 FOXI1Q12951 378 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 LCNL1Q6ZST4 164 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 PIFOQ8TCI5 191 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 ASCL2Q99929 193 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 ITPR3Q14573 2671 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 A0A1B0GWB2 263 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 WI2-2373I1.2A0A1W2PRP0 233 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 Q6AWC8 147 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 C18orf15Q96N68 181 aa12.39□□□□□ -0.43
USP43-204ENST00000573955 CTSGP08311 255 aa12.38□□□□□ -0.43
USP43-204ENST00000573955 NHLRC4P0CG21 123 aaPredicted RBP12.38□□□□□ -0.43
USP43-204ENST00000573955 TM4SF20Q53R12 229 aa12.38□□□□□ -0.43
USP43-204ENST00000573955 Q71RC1 249 aaPredicted RBP12.38□□□□□ -0.43
USP43-204ENST00000573955 FAM110DQ8TAY7 271 aaPredicted RBP12.38□□□□□ -0.43
USP43-204ENST00000573955 PPDPFQ9H3Y8 114 aa12.38□□□□□ -0.43
USP43-204ENST00000573955 CAMPP49913 170 aa12.38□□□□□ -0.43
USP43-204ENST00000573955 TIMM8BQ9Y5J9 83 aaPredicted RBP12.38□□□□□ -0.43
USP43-204ENST00000573955 FLNAP21333 2647 aaKnown RBP12.37□□□□□ -0.43
USP43-204ENST00000573955 PRSS29PA6NIE9 313 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 H3BUX3 64 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 TCRAP04437 139 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 GCSHP23434 173 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 ANXA2RQ3ZCQ2 193 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 GOLT1AQ6ZVE7 132 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 MOB4Q9Y3A3 225 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 CT45A10P0DMU9 189 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 FOXA3P55318 350 aaPredicted RBP12.37□□□□□ -0.43
USP43-204ENST00000573955 VCX2Q9H322 139 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 TMEM14CQ9P0S9 112 aa12.37□□□□□ -0.43
USP43-204ENST00000573955 CCDC179H3BU77 68 aa12.36□□□□□ -0.43
USP43-204ENST00000573955 CLEC19AQ6UXS0 136 aa12.36□□□□□ -0.43
USP43-204ENST00000573955 UNC79Q9P2D8 2635 aa12.36□□□□□ -0.43
USP43-204ENST00000573955 TRBV19A0A075B6N1 114 aa12.36□□□□□ -0.43
USP43-204ENST00000573955 B4DSR2 109 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 E9PLD3 99 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 K7ERJ3 54 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 NUP35Q8NFH5 326 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 OTORQ9NRC9 128 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 M0R3E3 92 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 PTH2Q96A98 100 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 PRELID3AQ96N28 172 aa12.35□□□□□ -0.43
USP43-204ENST00000573955 IGHV3OR16-13A0A075B7E8 117 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 IGHV3-74A0A0B4J1X5 117 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 LINC00322Q6ZN03 302 aaPredicted RBP12.34□□□□□ -0.43
USP43-204ENST00000573955 PRNTQ86SH4 94 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 PLA2G2AP14555 144 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 FXYD2P54710 66 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 CCDC140Q96MF4 163 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 PRO0461Q9UI25 63 aa12.34□□□□□ -0.43
USP43-204ENST00000573955 TRAV25A0A0B4J276 109 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 MRPS12O15235 138 aaKnown RBP12.33□□□□□ -0.44
USP43-204ENST00000573955 IGFL4Q6B9Z1 124 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 ATP6V0E2Q8NHE4 81 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 ZNF414Q96IQ9 312 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 TRAV41A0A0B4J266 112 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 TCTAP57738 103 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 FHL3Q13643 280 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 AMTNQ6UX39 209 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 SIGLEC15Q6ZMC9 328 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 CIARTQ8N365 385 aaPredicted RBP12.33□□□□□ -0.44
USP43-204ENST00000573955 FMC1Q96HJ9 113 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 KLF12Q9Y4X4 402 aa12.33□□□□□ -0.44
USP43-204ENST00000573955 IGHV3-49A0A0A0MS15 119 aa12.32□□□□□ -0.44
USP43-204ENST00000573955 Q6ZS46 218 aa12.32□□□□□ -0.44
USP43-204ENST00000573955 PHLDA1Q8WV24 401 aaPredicted RBP12.32□□□□□ -0.44
USP43-204ENST00000573955 CSDC2Q9Y534 153 aaKnown RBP12.32□□□□□ -0.44
USP43-204ENST00000573955 BLCAPP62952 87 aa12.32□□□□□ -0.44
USP43-204ENST00000573955 GLMPQ8WWB7 406 aa12.32□□□□□ -0.44
USP43-204ENST00000573955 SPANXA1Q9NS26 97 aa12.32□□□□□ -0.44
USP43-204ENST00000573955 NHP2Q9NX24 153 aaKnown RBP12.32□□□□□ -0.44
USP43-204ENST00000573955 IGLL5B9A064 214 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 RNF223E7ERA6 249 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 TGFAP01135 160 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 LTAP01374 205 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 Q86TA4 180 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 CUBNO60494 3623 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 NCR2O95944 276 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 PPIFP30405 207 aaKnown RBP12.31□□□□□ -0.44
USP43-204ENST00000573955 NDUFV3P56181 108 aaKnown RBP12.31□□□□□ -0.44
USP43-204ENST00000573955 DSCR9P59020 149 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 ATP5L2Q7Z4Y8 100 aa12.31□□□□□ -0.44
USP43-204ENST00000573955 A8MWL6 223 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 IGLV2-11P01706 119 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 SLC25A16P16260 332 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 NMUP48645 174 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 EEF1AKMT3Q96AZ1 226 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 ZNF747Q9BV97 191 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 MLST8Q9BVC4 326 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 PDZD2O15018 2839 aa12.3□□□□□ -0.44
USP43-204ENST00000573955 TRGV3P03979 118 aa12.29□□□□□ -0.44
USP43-204ENST00000573955 DAZAP1Q96EP5 407 aaKnown RBP12.29□□□□□ -0.44
USP43-204ENST00000573955 CITED2Q99967 270 aaPredicted RBP12.29□□□□□ -0.44
USP43-204ENST00000573955 HLA-DMBP28068 263 aa12.29□□□□□ -0.44
USP43-204ENST00000573955 ZNF138P52744 262 aa12.29□□□□□ -0.44
USP43-204ENST00000573955 FAM231DQ6ZW35 169 aa12.29□□□□□ -0.44
USP43-204ENST00000573955 MTORP42345 2549 aa12.29□□□□□ -0.44
USP43-204ENST00000573955 TRBV20-1A0A075B6N2 111 aa12.28□□□□□ -0.44
USP43-204ENST00000573955 A6NDX4 124 aa12.28□□□□□ -0.44
USP43-204ENST00000573955 HIGD1CA8MV81 97 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms