RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DEFB4AO15263 64 aa14.74□□□□□ -0.05
VPS53-210ENST00000571456 BAGE2Q86Y30 109 aa14.74□□□□□ -0.05
VPS53-210ENST00000571456 C8orf49Q96NF6 230 aa14.74□□□□□ -0.05
VPS53-210ENST00000571456 EIF5A2Q9GZV4 153 aaKnown RBP14.74□□□□□ -0.05
VPS53-210ENST00000571456 DKK2Q9UBU2 259 aa14.74□□□□□ -0.05
VPS53-210ENST00000571456 BIN3Q9NQY0 253 aa14.73□□□□□ -0.05
VPS53-210ENST00000571456 TP53TG3Q9ULZ0 132 aa14.73□□□□□ -0.05
VPS53-210ENST00000571456 DNAH10Q8IVF4 4471 aa14.73□□□□□ -0.05
VPS53-210ENST00000571456 AZU1P20160 251 aa14.72□□□□□ -0.05
VPS53-210ENST00000571456 DAZ2Q13117 558 aaKnown RBP14.72□□□□□ -0.05
VPS53-210ENST00000571456 TOR2AQ5JU69 321 aa14.72□□□□□ -0.05
VPS53-210ENST00000571456 FAM162BQ5T6X4 162 aa14.72□□□□□ -0.05
VPS53-210ENST00000571456 MLST8Q9BVC4 326 aa14.72□□□□□ -0.05
VPS53-210ENST00000571456 SDF2L1Q9HCN8 221 aa14.72□□□□□ -0.05
VPS53-210ENST00000571456 PLAC8L1A1L4L8 177 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 LY6G6CO95867 125 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 EMP1P54849 157 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 TCL1AP56279 114 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 ZNF415Q09FC8 603 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 FAM222AQ5U5X8 452 aa14.71□□□□□ -0.05
VPS53-210ENST00000571456 GNG4P50150 75 aa14.7□□□□□ -0.06
VPS53-210ENST00000571456 ZNF80P51504 273 aaPredicted RBP14.7□□□□□ -0.06
VPS53-210ENST00000571456 ZNF674Q2M3X9 581 aa14.7□□□□□ -0.06
VPS53-210ENST00000571456 ZC2HC1AQ96GY0 325 aa14.7□□□□□ -0.06
VPS53-210ENST00000571456 C9JCJ5 164 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 PEA15Q15121 130 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 MUC21Q5SSG8 566 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 C11orf72Q8NBR9 251 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 SPXQ9BT56 116 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 NAGKQ9UJ70 344 aa14.69□□□□□ -0.06
VPS53-210ENST00000571456 NUPR2A6NF83 97 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 LGALS9BQ3B8N2 356 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 CENPWQ5EE01 88 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 CLLU1Q5K131 121 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 DERL1Q9BUN8 251 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 MUC4Q99102 2169 aa14.68□□□□□ -0.06
VPS53-210ENST00000571456 PRM2P04554 102 aa14.67□□□□□ -0.06
VPS53-210ENST00000571456 CELA1Q9UNI1 258 aa14.67□□□□□ -0.06
VPS53-210ENST00000571456 NANOS2P60321 138 aaKnown RBP14.66□□□□□ -0.06
VPS53-210ENST00000571456 DAD1P61803 113 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 Q6ZQT7 251 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 LINC00612Q8N6U2 182 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 C18orf15Q96N68 181 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 PARLQ9H300 379 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 NOP10Q9NPE3 64 aaKnown RBP14.66□□□□□ -0.06
VPS53-210ENST00000571456 GSN-AS1Q9NRJ2 163 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 ABCA13Q86UQ4 5058 aa14.66□□□□□ -0.06
VPS53-210ENST00000571456 TRAV10A0A0B4J240 114 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 SH2D1AO60880 128 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 TYMSP04818 313 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 CRIP1P50238 77 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 C12orf74Q32Q52 190 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 LINC01559Q495D7 138 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 FAM74A3Q4VXF1 159 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 NDUFAF3Q9BU61 184 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 LY96Q9Y6Y9 160 aa14.65□□□□□ -0.06
VPS53-210ENST00000571456 IGHV3-16A0A0C4DH30 117 aa14.64□□□□□ -0.07
VPS53-210ENST00000571456 ORM1P02763 201 aa14.64□□□□□ -0.07
VPS53-210ENST00000571456 CXCL1P09341 107 aa14.64□□□□□ -0.07
VPS53-210ENST00000571456 IFITM2Q01629 132 aa14.64□□□□□ -0.07
VPS53-210ENST00000571456 DNLZQ5SXM8 178 aa14.64□□□□□ -0.07
VPS53-210ENST00000571456 PHLDA1Q8WV24 401 aaPredicted RBP14.64□□□□□ -0.07
VPS53-210ENST00000571456 PCNPQ8WW12 178 aaKnown RBP14.64□□□□□ -0.07
VPS53-210ENST00000571456 KLK5Q9Y337 293 aaPredicted RBP14.64□□□□□ -0.07
VPS53-210ENST00000571456 RAB19A4D1S5 217 aa14.63□□□□□ -0.07
VPS53-210ENST00000571456 SPINK4O60575 86 aa14.63□□□□□ -0.07
VPS53-210ENST00000571456 SRP19P09132 144 aaKnown RBP14.63□□□□□ -0.07
VPS53-210ENST00000571456 NHLRC2Q8NBF2 726 aa14.63□□□□□ -0.07
VPS53-210ENST00000571456 DAZAP1Q96EP5 407 aaKnown RBP14.63□□□□□ -0.07
VPS53-210ENST00000571456 C11orf21Q9P2W6 132 aa14.63□□□□□ -0.07
VPS53-210ENST00000571456 B4DEV8 164 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 IGLV2-8P01709 118 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 TCTAP57738 103 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 CEMP1Q6PRD7 247 aaPredicted RBP14.62□□□□□ -0.07
VPS53-210ENST00000571456 Q6ZTC4 211 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 PTH2Q96A98 100 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 FAM210BQ96KR6 192 aa14.62□□□□□ -0.07
VPS53-210ENST00000571456 TRBV20OR9-2A0A075B6H5 130 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 IGKV3D-20A0A0C4DH25 116 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 KRBOX1C9JBD0 128 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 GNRH2O43555 120 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 ATP5G1P05496 136 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 MGST1P10620 155 aaKnown RBP14.61□□□□□ -0.07
VPS53-210ENST00000571456 S100A4P26447 101 aaKnown RBP14.61□□□□□ -0.07
VPS53-210ENST00000571456 ASIPP42127 132 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 PIK3CD-AS1Q5SR53 167 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 SMIM7Q9BQ49 75 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 MDFICQ9P1T7 246 aa14.61□□□□□ -0.07
VPS53-210ENST00000571456 M0R2P5 195 aa14.6□□□□□ -0.07
VPS53-210ENST00000571456 DEFB130BP0DP73 79 aa14.6□□□□□ -0.07
VPS53-210ENST00000571456 DEFB130AP0DP74 79 aa14.6□□□□□ -0.07
VPS53-210ENST00000571456 RASL10AQ92737 203 aa14.6□□□□□ -0.07
VPS53-210ENST00000571456 IL36BQ9NZH7 164 aa14.6□□□□□ -0.07
VPS53-210ENST00000571456 DEFB131BA0A096LNP1 70 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 TRGV1A0A0A0MS02 117 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 ZNF727A8MUV8 499 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 MED14OSP0DP75 135 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 CEBPGP53567 150 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 RPS20P60866 119 aaKnown RBP14.59□□□□□ -0.07
VPS53-210ENST00000571456 OR5I1Q13606 314 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms