RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	EIF5A	P63241	154 aa	Known RBP	7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	RPP30	P78346	268 aa	Known RBP	7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	LCE1D	Q5T752	114 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232		Q6ZRU5	148 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	ZNF546	Q86UE3	836 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	BPIFA4P	Q86YQ2	179 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	TMEM37	Q8WXS4	190 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	AGPAT4-IT1	Q9H0P7	198 aa		7.63	□□□□□ -1.19
CLK3-222	ENST00000568232	FXYD6-FXYD2	A0A087WZ82	144 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	IGHV3-16	A0A0C4DH30	117 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	KANTR	A0A1W2PQU2	76 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	C5orf51	A6NDU8	294 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	SYNGR2	O43760	224 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	TSC22D2	O75157	780 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	SELENOT	P62341	195 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	SLC38A11	Q08AI6	406 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	LAGE3	Q14657	143 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232		Q5BKY6	102 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	CLLU1	Q5K131	121 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	S100A7A	Q86SG5	101 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	PHYHIPL	Q96FC7	376 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	C2orf50	Q96LR7	162 aa		7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	CIB3	Q96Q77	187 aa	Predicted RBP	7.62	□□□□□ -1.19
CLK3-222	ENST00000568232	LPA	P08519	4548 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	DUXB	A0A1W2PPF3	345 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	RNF222	A6NCQ9	220 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232		G3V3Q6	166 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	ARPC5	O15511	151 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	MED6	O75586	246 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	TMUB2	Q71RG4	321 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	SH2D6	Q7Z4S9	175 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	KCNRG	Q8N5I3	272 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	ZFAND2A	Q8N6M9	145 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	SUN5	Q8TC36	379 aa		7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	STRAP	Q9Y3F4	350 aa	Known RBP	7.61	□□□□□ -1.19
CLK3-222	ENST00000568232	LINC00862	A6NCI5	91 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	TAAR5	O14804	337 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	SIX6	O95475	246 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	CRISP2	P16562	243 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	MUC21	Q5SSG8	566 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	EIF5AL1	Q6IS14	154 aa	Known RBP	7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	DAZ4	Q86SG3	579 aa	Known RBP	7.6	□□□□□ -1.19
CLK3-222	ENST00000568232		Q8N976	141 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	PPP1R1C	Q8WVI7	109 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	RASL10A	Q92737	203 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	DNAJC30	Q96LL9	226 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	LINC00477	Q96M19	166 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	DAZ3	Q9NR90	486 aa	Known RBP	7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	MED9	Q9NWA0	146 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	TNFSF18	Q9UNG2	199 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	RNF24	Q9Y225	148 aa		7.6	□□□□□ -1.19
CLK3-222	ENST00000568232	TRAV8-3	A0A0A6YYJ7	113 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232	TRAV4	A0A0B4J268	109 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232	MPC2	O95563	127 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232	LELP1	Q5T871	98 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232	OR4C5	Q8NGB2	326 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232	PAXX	Q9BUH6	204 aa		7.59	□□□□□ -1.19
CLK3-222	ENST00000568232		K7EPK0	472 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	BCL2L11	O43521	198 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	COX7A2P2	O60397	106 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	HOXB5	P09067	269 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	KRTAP4-7	Q9BYR0	210 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	NPVF	Q9HCQ7	196 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	RPH3AL	Q9UNE2	315 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	MUC2	Q02817	5179 aa		7.58	□□□□□ -1.2
CLK3-222	ENST00000568232	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	CCS	O14618	274 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	AGPAT2	O15120	278 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	IGKV2D-40	P01614	121 aa	Predicted RBP	7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	PFN1	P07737	140 aa	Known RBP	7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	SLC25A6	P12236	298 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	GATA1	P15976	413 aa	Predicted RBP	7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	GUK1	Q16774	197 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	PXDC1	Q5TGL8	231 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	C10orf113	Q5VZT2	155 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	SLC25A29	Q8N8R3	303 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	ATP6V0E2	Q8NHE4	81 aa		7.57	□□□□□ -1.2
CLK3-222	ENST00000568232	NDUFB4	O95168	129 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	NMB	P08949	121 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	TPT1	P13693	172 aa	Known RBP	7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	PVALB	P20472	110 aa	Predicted RBP	7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	TMEM183B	Q1AE95	376 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	IAH1	Q2TAA2	248 aa	Predicted RBP	7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	TMEM183A	Q8IXX5	376 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	EXOC3-AS1	Q8N2X6	119 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	LINC00469	Q8N7U9	141 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	STOML3	Q8TAV4	291 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	MRPL53	Q96EL3	112 aa	Known RBP	7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	AQP10	Q96PS8	301 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	SPX	Q9BT56	116 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	PSENEN	Q9NZ42	101 aa		7.56	□□□□□ -1.2
CLK3-222	ENST00000568232	FAT4	Q6V0I7	4981 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	TRBV19	A0A075B6N1	114 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	IGKV2D-24	A0A075B6R9	120 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	PANO1	I0J062	215 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	POLR2G	P62487	172 aa	Known RBP eCLIP	7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	IL15RA	Q13261	267 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232		Q8TAT8	98 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	GTSF1L	Q9H1H1	148 aa		7.55	□□□□□ -1.2
CLK3-222	ENST00000568232	ZNF492	Q9P255	531 aa		7.55	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms