RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	LRP1B	Q9NZR2	4599 aa		10.18	□□□□□ -0.78
CLN3-222	ENST00000566083		K7EQM0	130 aa		10.17	□□□□□ -0.78
CLN3-222	ENST00000566083	PTTG1	O95997	202 aa		10.17	□□□□□ -0.78
CLN3-222	ENST00000566083	SFTA3	P0C7M3	94 aa		10.17	□□□□□ -0.78
CLN3-222	ENST00000566083	GYPE	P15421	78 aa		10.17	□□□□□ -0.78
CLN3-222	ENST00000566083	GOLT1A	Q6ZVE7	132 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	OR10G9	Q8NGN4	311 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	OR10G7	Q8NGN6	311 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	RPH3AL	Q9UNE2	315 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	IGHV3-16	A0A0C4DH30	117 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	MB	P02144	154 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	DNAH10OS	P0CZ25	163 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	TIRAP	P58753	221 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083		Q6ZNX1	250 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	SCRT2	Q9NQ03	307 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083	MSRB1	Q9NZV6	116 aa		10.16	□□□□□ -0.78
CLN3-222	ENST00000566083		A0A1B0GVG6	124 aa		10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	FBLL1	A6NHQ2	334 aa	Known RBP	10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	CDC34	P49427	236 aa	Predicted RBP	10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	C5orf17	Q8NAS9	161 aa		10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	OR2G3	Q8NGZ4	309 aa		10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	ASB13	Q8WXK3	278 aa		10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	PSMG3	Q9BT73	122 aa	Predicted RBP	10.15	□□□□□ -0.79
CLN3-222	ENST00000566083	TAAR5	O14804	337 aa		10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	GNRH2	O43555	120 aa		10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	PFN1	P07737	140 aa	Known RBP	10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	RAB2A	P61019	212 aa		10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	SERF2	P84101	59 aa		10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	WFDC1	Q9HC57	220 aa		10.14	□□□□□ -0.79
CLN3-222	ENST00000566083	TYMS	P04818	313 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	STAG3L2	P0CL84	134 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	STAG3L3	P0CL85	134 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	ZFP69	Q49AA0	526 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	SH3BGRL3	Q9H299	93 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	TMEM167B	Q9NRX6	74 aa		10.13	□□□□□ -0.79
CLN3-222	ENST00000566083	ARL14EPL	P0DKL9	152 aa		10.12	□□□□□ -0.79
CLN3-222	ENST00000566083	GATA1	P15976	413 aa	Predicted RBP	10.12	□□□□□ -0.79
CLN3-222	ENST00000566083	WFDC10B	Q8IUB3	73 aa		10.12	□□□□□ -0.79
CLN3-222	ENST00000566083	NHLRC2	Q8NBF2	726 aa		10.12	□□□□□ -0.79
CLN3-222	ENST00000566083	PRADC1	Q9BSG0	188 aa		10.12	□□□□□ -0.79
CLN3-222	ENST00000566083		A0A087WTM6	91 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	TRAV8-1	A0A0A6YYK1	113 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	TRAV8-6	A0A0B4J262	113 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083		F6UZH7	168 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	TCRA	P04437	139 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	CRYGD	P07320	174 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	PPT1	P50897	306 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	ZNF876P	Q49A33	203 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	SAPCD1	Q5SSQ6	148 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	SUN5	Q8TC36	379 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	RAB24	Q969Q5	203 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	TVP23C	Q96ET8	276 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	AQP10	Q96PS8	301 aa		10.11	□□□□□ -0.79
CLN3-222	ENST00000566083	IGHV3-38	A0A0C4DH36	116 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	TRBV6-4	A0A1B0GX49	114 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	CXorf1	O96002	111 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	RHOH	Q15669	191 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	HSD17B11	Q8NBQ5	300 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	PTH2	Q96A98	100 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	TNFSF18	Q9UNG2	199 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	TNFRSF18	Q9Y5U5	241 aa		10.1	□□□□□ -0.79
CLN3-222	ENST00000566083	DNAH5	Q8TE73	4624 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	EPM2A	B3EWF7	344 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	HMGB3	O15347	200 aa	Known RBP	10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	EIF3G	O75821	320 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	GCHFR	P30047	84 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	GNG5	P63218	68 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	SMUG1	Q53HV7	270 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	ACTR3C	Q9C0K3	210 aa	Predicted RBP	10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	MED28	Q9H204	178 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	PSG8	Q9UQ74	426 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	ALG5	Q9Y673	324 aa		10.09	□□□□□ -0.79
CLN3-222	ENST00000566083	MGST1	P10620	155 aa	Known RBP	10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	ATP6V0C	P27449	155 aa		10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	SUMO1	P63165	101 aa	Known RBP	10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	FLI1	Q01543	452 aa	Predicted RBP	10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	LINC01556	Q5JQF7	62 aa		10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	CYB561D1	Q8N8Q1	229 aa		10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	TMEM75	Q8N9X5	138 aa		10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	INO80E	Q8NBZ0	244 aa	Predicted RBP	10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	EPDR1	Q9UM22	224 aa		10.08	□□□□□ -0.8
CLN3-222	ENST00000566083	hCG_2014768	A0A024R1R8	64 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083		A0A1W2PRE2	83 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	RS1	O15537	224 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	PSCA	O43653	123 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	GCG	P01275	180 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	PIK3CD-AS1	Q5SR53	167 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	CFAP126	Q5VTH2	177 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	SLC25A29	Q8N8R3	303 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	NKX6-2	Q9C056	277 aa	Predicted RBP	10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	BORCS7-ASMT	A0A0B4J1R7	106 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	OR10J3	Q5JRS4	329 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	NTN5	Q8WTR8	489 aa	Predicted RBP	10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	SGK494	Q96LW2	274 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	C9orf85	Q96MD7	179 aa		10.07	□□□□□ -0.8
CLN3-222	ENST00000566083	APOB	P04114	4563 aa	Known RBP	10.06	□□□□□ -0.8
CLN3-222	ENST00000566083	IBA57-AS1	B1ANH7	110 aa		10.06	□□□□□ -0.8
CLN3-222	ENST00000566083	LELP1	Q5T871	98 aa		10.06	□□□□□ -0.8
CLN3-222	ENST00000566083	PRNT	Q86SH4	94 aa		10.06	□□□□□ -0.8
CLN3-222	ENST00000566083	LOC100131303	A0A0U1RQF7	123 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms