RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 IGHV3-16A0A0C4DH30 117 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 K7EQM0 130 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 M0R2P5 195 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 GIPP09681 153 aaPredicted RBP15.4■□□□□ 0.06
CLN3-215ENST00000565236 SPATA12Q7Z6I5 190 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 C5orf17Q8NAS9 161 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 PCNPQ8WW12 178 aaKnown RBP15.4■□□□□ 0.06
CLN3-215ENST00000565236 ASB13Q8WXK3 278 aa15.4■□□□□ 0.06
CLN3-215ENST00000565236 SRIP30626 198 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 LINC00315P59091 139 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 OR4C5Q8NGB2 326 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 SUN5Q8TC36 379 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 ACTR3CQ9C0K3 210 aaPredicted RBP15.39■□□□□ 0.05
CLN3-215ENST00000565236 TMEM167BQ9NRX6 74 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 TNFSF18Q9UNG2 199 aa15.39■□□□□ 0.05
CLN3-215ENST00000565236 TRAV4A0A0B4J268 109 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 K7EQD1 137 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 CXorf1O96002 111 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 ORM1P02763 201 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 TCRAP04437 139 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 TYMSP04818 313 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 GYPEP15421 78 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 SUMO1P63165 101 aaKnown RBP15.38■□□□□ 0.05
CLN3-215ENST00000565236 SH3BGRL3Q9H299 93 aa15.38■□□□□ 0.05
CLN3-215ENST00000565236 LRP1BQ9NZR2 4599 aa15.37■□□□□ 0.05
CLN3-215ENST00000565236 BORCS7-ASMTA0A0B4J1R7 106 aa15.36■□□□□ 0.05
CLN3-215ENST00000565236 EPDR1Q9UM22 224 aa15.36■□□□□ 0.05
CLN3-215ENST00000565236 PSG8Q9UQ74 426 aa15.36■□□□□ 0.05
CLN3-215ENST00000565236 TRAV9-2A0A087WT02 112 aa15.35■□□□□ 0.05
CLN3-215ENST00000565236 FXYD6-FXYD2A0A087WZ82 144 aa15.35■□□□□ 0.05
CLN3-215ENST00000565236 C9JCJ5 164 aa15.35■□□□□ 0.05
CLN3-215ENST00000565236 CDK2AP2O75956 126 aa15.35■□□□□ 0.05
CLN3-215ENST00000565236 RPL7L1Q6DKI1 246 aaKnown RBP15.35■□□□□ 0.05
CLN3-215ENST00000565236 TXNDC17Q9BRA2 123 aa15.35■□□□□ 0.05
CLN3-215ENST00000565236 TAAR5O14804 337 aa15.34■□□□□ 0.05
CLN3-215ENST00000565236 FLI1Q01543 452 aaPredicted RBP15.34■□□□□ 0.05
CLN3-215ENST00000565236 RNF222A6NCQ9 220 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 GGTLC3B5MD39 225 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 GCGP01275 180 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 ZNF80P51504 273 aaPredicted RBP15.33■□□□□ 0.04
CLN3-215ENST00000565236 ZFP69Q49AA0 526 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 PRNTQ86SH4 94 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 CYB561D1Q8N8Q1 229 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 OR2T35Q8NGX2 323 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 LY96Q9Y6Y9 160 aa15.33■□□□□ 0.04
CLN3-215ENST00000565236 HSPG2P98160 4391 aa15.32■□□□□ 0.04
CLN3-215ENST00000565236 IGLV2-11P01706 119 aa15.32■□□□□ 0.04
CLN3-215ENST00000565236 ZNF876PQ49A33 203 aa15.32■□□□□ 0.04
CLN3-215ENST00000565236 SMUG1Q53HV7 270 aa15.32■□□□□ 0.04
CLN3-215ENST00000565236 Q6ZRN7 208 aaPredicted RBP15.32■□□□□ 0.04
CLN3-215ENST00000565236 C11orf21Q9P2W6 132 aa15.32■□□□□ 0.04
CLN3-215ENST00000565236 A0A1W2PRE2 83 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 FBLL1A6NHQ2 334 aaKnown RBP15.31■□□□□ 0.04
CLN3-215ENST00000565236 PFN1P07737 140 aaKnown RBP15.31■□□□□ 0.04
CLN3-215ENST00000565236 KRTAP10-2P60368 255 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 SAPCD1Q5SSQ6 148 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 SH2D6Q7Z4S9 175 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 TMEM75Q8N9X5 138 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 TNFRSF18Q9Y5U5 241 aa15.31■□□□□ 0.04
CLN3-215ENST00000565236 NFE4Q86UQ8 179 aa15.3■□□□□ 0.04
CLN3-215ENST00000565236 ABCA13Q86UQ4 5058 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 LOC100131303A0A0U1RQF7 123 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 CTXND1A0A1B0GTU2 59 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 K7EP13 123 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 IFNA7P01567 189 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 GATA1P15976 413 aaPredicted RBP15.29■□□□□ 0.04
CLN3-215ENST00000565236 EVI2AP22794 236 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 WFDC10BQ8IUB3 73 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 NHLRC2Q8NBF2 726 aa15.29■□□□□ 0.04
CLN3-215ENST00000565236 EREGO14944 169 aa15.28■□□□□ 0.04
CLN3-215ENST00000565236 ZNF726P1Q15940 193 aa15.28■□□□□ 0.04
CLN3-215ENST00000565236 DNAH5Q8TE73 4624 aa15.28■□□□□ 0.04
CLN3-215ENST00000565236 CIDEAO60543 219 aa15.27■□□□□ 0.04
CLN3-215ENST00000565236 RGS21Q2M5E4 152 aa15.27■□□□□ 0.04
CLN3-215ENST00000565236 AKR1C8PQ5T2L2 129 aa15.27■□□□□ 0.04
CLN3-215ENST00000565236 LINC00479Q96M42 142 aa15.27■□□□□ 0.04
CLN3-215ENST00000565236 TRAV34A0A0B4J273 112 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 RS1O15537 224 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 DNAH10OSP0CZ25 163 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 PPT1P50897 306 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 UBE2G2P60604 165 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 ERVFC1-1P60608 527 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 CFAP126Q5VTH2 177 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 MAPKAPK5-AS1Q8N8E1 139 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 C9orf85Q96MD7 179 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 KRTAP4-5Q9BYR2 181 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 MSRB1Q9NZV6 116 aa15.26■□□□□ 0.03
CLN3-215ENST00000565236 DPPA3Q6W0C5 159 aa15.25■□□□□ 0.03
CLN3-215ENST00000565236 SLC25A29Q8N8R3 303 aa15.25■□□□□ 0.03
CLN3-215ENST00000565236 PRADC1Q9BSG0 188 aa15.25■□□□□ 0.03
CLN3-215ENST00000565236 NKX6-2Q9C056 277 aaPredicted RBP15.25■□□□□ 0.03
CLN3-215ENST00000565236 PGPEP1Q9NXJ5 209 aa15.25■□□□□ 0.03
CLN3-215ENST00000565236 IGHV3-73A0A0B4J1V6 119 aa15.24■□□□□ 0.03
CLN3-215ENST00000565236 PGPEP1LA6NFU8 196 aa15.24■□□□□ 0.03
CLN3-215ENST00000565236 FGF8P55075 233 aaPredicted RBP15.24■□□□□ 0.03
CLN3-215ENST00000565236 PTH2Q96A98 100 aa15.24■□□□□ 0.03
CLN3-215ENST00000565236 ARL2-SNX15V9GYD0 113 aa15.24■□□□□ 0.03
CLN3-215ENST00000565236 APOBP04114 4563 aaKnown RBP15.23■□□□□ 0.03
CLN3-215ENST00000565236 TRBV6-4A0A1B0GX49 114 aa15.23■□□□□ 0.03
CLN3-215ENST00000565236 FABP5P3A8MUU1 101 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms