RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RPL7L1Q6DKI1 246 aaKnown RBP11.63□□□□□ -0.55
CLK3-210ENST00000563112 SDF2L1Q9HCN8 221 aa11.63□□□□□ -0.55
CLK3-210ENST00000563112 GNRH2O43555 120 aa11.62□□□□□ -0.55
CLK3-210ENST00000563112 SUMO1P63165 101 aaKnown RBP11.62□□□□□ -0.55
CLK3-210ENST00000563112 TNP2Q05952 138 aa11.62□□□□□ -0.55
CLK3-210ENST00000563112 IQCF2Q8IXL9 164 aa11.62□□□□□ -0.55
CLK3-210ENST00000563112 TVP23CQ96ET8 276 aa11.62□□□□□ -0.55
CLK3-210ENST00000563112 SGK494Q96LW2 274 aa11.62□□□□□ -0.55
CLK3-210ENST00000563112 DYNC1H1Q14204 4646 aaKnown RBP11.62□□□□□ -0.55
CLK3-210ENST00000563112 IGHV3-16A0A0C4DH30 117 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 RNF222A6NCQ9 220 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 M0R2P5 195 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 SFTA3P0C7M3 94 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 ZFP69Q49AA0 526 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 PCNPQ8WW12 178 aaKnown RBP11.61□□□□□ -0.55
CLK3-210ENST00000563112 EPDR1Q9UM22 224 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 PSG8Q9UQ74 426 aa11.61□□□□□ -0.55
CLK3-210ENST00000563112 FBLL1A6NHQ2 334 aaKnown RBP11.6□□□□□ -0.55
CLK3-210ENST00000563112 SIVA1O15304 175 aa11.6□□□□□ -0.55
CLK3-210ENST00000563112 BTF3P20290 206 aaKnown RBP11.6□□□□□ -0.55
CLK3-210ENST00000563112 NEGR1Q7Z3B1 354 aa11.6□□□□□ -0.55
CLK3-210ENST00000563112 OR4C5Q8NGB2 326 aa11.6□□□□□ -0.55
CLK3-210ENST00000563112 ZNF479Q96JC4 524 aa11.6□□□□□ -0.55
CLK3-210ENST00000563112 TRAV4A0A0B4J268 109 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 CTXND1A0A1B0GTU2 59 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 A0A1W2PRE2 83 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 TAAR5O14804 337 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 NXPH4O95158 308 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 ORM1P02763 201 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 TYMSP04818 313 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 FLI1Q01543 452 aaPredicted RBP11.59□□□□□ -0.55
CLK3-210ENST00000563112 AKR1C8PQ5T2L2 129 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 CYB561D1Q8N8Q1 229 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 KRTAP1-5Q9BYS1 174 aa11.59□□□□□ -0.55
CLK3-210ENST00000563112 GGTLC3B5MD39 225 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 GCGP01275 180 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 SRIP30626 198 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 NDUFA5Q16718 116 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 SMUG1Q53HV7 270 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 SAPCD1Q5SSQ6 148 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 LYPD5Q6UWN5 251 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 PRNTQ86SH4 94 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 ZNF575Q86XF7 245 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 TMEM75Q8N9X5 138 aa11.58□□□□□ -0.56
CLK3-210ENST00000563112 ARPC5O15511 151 aa11.57□□□□□ -0.56
CLK3-210ENST00000563112 IFNA7P01567 189 aa11.57□□□□□ -0.56
CLK3-210ENST00000563112 PFN1P07737 140 aaKnown RBP11.57□□□□□ -0.56
CLK3-210ENST00000563112 GYPEP15421 78 aa11.57□□□□□ -0.56
CLK3-210ENST00000563112 TCTE3Q8IZS6 198 aa11.57□□□□□ -0.56
CLK3-210ENST00000563112 C9JCJ5 164 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 K7EQD1 137 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 PPT1P50897 306 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 ZNF726P1Q15940 193 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 FAM210AQ96ND0 272 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 TXNDC17Q9BRA2 123 aa11.56□□□□□ -0.56
CLK3-210ENST00000563112 NKX6-2Q9C056 277 aaPredicted RBP11.56□□□□□ -0.56
CLK3-210ENST00000563112 C16orf90A8MZG2 172 aa11.55□□□□□ -0.56
CLK3-210ENST00000563112 IGLV2-11P01706 119 aa11.55□□□□□ -0.56
CLK3-210ENST00000563112 ZNF80P51504 273 aaPredicted RBP11.55□□□□□ -0.56
CLK3-210ENST00000563112 TRAV9-2A0A087WT02 112 aa11.54□□□□□ -0.56
CLK3-210ENST00000563112 FGF8P55075 233 aaPredicted RBP11.54□□□□□ -0.56
CLK3-210ENST00000563112 UBE2G2P60604 165 aa11.54□□□□□ -0.56
CLK3-210ENST00000563112 ZNF876PQ49A33 203 aa11.54□□□□□ -0.56
CLK3-210ENST00000563112 SH2D6Q7Z4S9 175 aa11.54□□□□□ -0.56
CLK3-210ENST00000563112 C11orf21Q9P2W6 132 aa11.54□□□□□ -0.56
CLK3-210ENST00000563112 G3V3Q6 166 aa11.53□□□□□ -0.56
CLK3-210ENST00000563112 CIDEAO60543 219 aa11.53□□□□□ -0.56
CLK3-210ENST00000563112 LINC00315P59091 139 aa11.53□□□□□ -0.56
CLK3-210ENST00000563112 TRAV34A0A0B4J273 112 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 MAP1LC3B2A6NCE7 125 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 PEX7O00628 323 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 STOML3Q8TAV4 291 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 HIST1H2BAQ96A08 127 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 LINC00479Q96M42 142 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 MAP1LC3BQ9GZQ8 125 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 CYTL1Q9NRR1 136 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 LY96Q9Y6Y9 160 aa11.52□□□□□ -0.57
CLK3-210ENST00000563112 FAM74A7A6NL05 159 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 FABP5P3A8MUU1 101 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 RS1O15537 224 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 C1QBP02746 253 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 GATA1P15976 413 aaPredicted RBP11.51□□□□□ -0.57
CLK3-210ENST00000563112 SPATA12Q7Z6I5 190 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 NHLRC2Q8NBF2 726 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 PTH2Q96A98 100 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 C9orf85Q96MD7 179 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 ARL2-SNX15V9GYD0 113 aa11.51□□□□□ -0.57
CLK3-210ENST00000563112 RYR1P21817 5038 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 SMLR1H3BR10 107 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 K7EP13 123 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 EVI2AP22794 236 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 S100A4P26447 101 aaKnown RBP11.5□□□□□ -0.57
CLK3-210ENST00000563112 CFAP126Q5VTH2 177 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 NFE4Q86UQ8 179 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 PRADC1Q9BSG0 188 aa11.5□□□□□ -0.57
CLK3-210ENST00000563112 UBE2G1P62253 170 aa11.49□□□□□ -0.57
CLK3-210ENST00000563112 ZNF345Q14585 488 aa11.49□□□□□ -0.57
CLK3-210ENST00000563112 Q86TA4 180 aa11.49□□□□□ -0.57
CLK3-210ENST00000563112 KCNRGQ8N5I3 272 aa11.49□□□□□ -0.57
CLK3-210ENST00000563112 LOC100131303A0A0U1RQF7 123 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms