RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TRBV6-4A0A1B0GX49 114 aa10.92□□□□□ -0.66
CLN3-208ENST00000561505 LAGE3Q14657 143 aa10.92□□□□□ -0.66
CLN3-208ENST00000561505 PTH2Q96A98 100 aa10.92□□□□□ -0.66
CLN3-208ENST00000561505 CCDC32Q9BV29 185 aa10.92□□□□□ -0.66
CLN3-208ENST00000561505 TRAV21A0A0B4J279 112 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 C17orf112F2Z3M2 114 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 PSCAO43653 123 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 TYMSP04818 313 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 UBE2L3P68036 154 aaKnown RBP10.91□□□□□ -0.66
CLN3-208ENST00000561505 SLC25A29Q8N8R3 303 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 OTORQ9NRC9 128 aa10.91□□□□□ -0.66
CLN3-208ENST00000561505 RS1O15537 224 aa10.9□□□□□ -0.66
CLN3-208ENST00000561505 KHDC3LQ587J8 217 aa10.9□□□□□ -0.66
CLN3-208ENST00000561505 LELP1Q5T871 98 aa10.9□□□□□ -0.66
CLN3-208ENST00000561505 KCNS1Q96KK3 526 aa10.9□□□□□ -0.66
CLN3-208ENST00000561505 TRAV8-6A0A0B4J262 113 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 FAM240BA0A1B0GVZ2 78 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 FBLL1A6NHQ2 334 aaKnown RBP10.89□□□□□ -0.67
CLN3-208ENST00000561505 CFAP126Q5VTH2 177 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 DPPA3Q6W0C5 159 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 LINC00299Q6ZSB3 139 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 NHLRC2Q8NBF2 726 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 ATP5SQ99766 215 aa10.89□□□□□ -0.67
CLN3-208ENST00000561505 PGPA6NDG6 321 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 SIX6O95475 246 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 PPT1P50897 306 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 TAS2R45P59539 299 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 CYCSP99999 105 aaKnown RBP10.88□□□□□ -0.67
CLN3-208ENST00000561505 ASAH1Q13510 395 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 WFDC2Q14508 124 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 SDF2L1Q9HCN8 221 aa10.88□□□□□ -0.67
CLN3-208ENST00000561505 J3QL48 77 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 PLA2G1BP04054 148 aaKnown RBP10.87□□□□□ -0.67
CLN3-208ENST00000561505 RHOHQ15669 191 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 FFAR4Q5NUL3 377 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 C9orf85Q96MD7 179 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 PRADC1Q9BSG0 188 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 TM2D2Q9BX73 214 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 GTSF1LQ9H1H1 148 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 C11orf21Q9P2W6 132 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 MBD2Q9UBB5 411 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 NAGKQ9UJ70 344 aa10.87□□□□□ -0.67
CLN3-208ENST00000561505 LINC00694P0DN24 101 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 KRTAP10-4P60372 401 aaPredicted RBP10.86□□□□□ -0.67
CLN3-208ENST00000561505 ZNF876PQ49A33 203 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 OR10J3Q5JRS4 329 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 FAM74A1Q5RGS3 127 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 PQLC2Q6ZP29 291 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 GOLT1AQ6ZVE7 132 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 ASB13Q8WXK3 278 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 Q9HAA7 133 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 TREM1Q9NP99 234 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 HSPB11Q9Y547 144 aa10.86□□□□□ -0.67
CLN3-208ENST00000561505 HMCN2Q8NDA2 5059 aa10.85□□□□□ -0.67
CLN3-208ENST00000561505 TRAV8-1A0A0A6YYK1 113 aa10.85□□□□□ -0.67
CLN3-208ENST00000561505 CMTM2Q8TAZ6 248 aa10.85□□□□□ -0.67
CLN3-208ENST00000561505 HYLS1Q96M11 299 aa10.85□□□□□ -0.67
CLN3-208ENST00000561505 ZNF80P51504 273 aaPredicted RBP10.84□□□□□ -0.67
CLN3-208ENST00000561505 H2BFSP57053 126 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 PIK3CD-AS1Q5SR53 167 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 MZT2BQ6NZ67 158 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 ATP6V0E2Q8NHE4 81 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 SUN5Q8TC36 379 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 DEFB104AQ8WTQ1 72 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 PPP1R1CQ8WVI7 109 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 NDUFA13Q9P0J0 144 aa10.84□□□□□ -0.67
CLN3-208ENST00000561505 LRP1Q07954 4544 aaKnown RBP10.83□□□□□ -0.68
CLN3-208ENST00000561505 SERTM2A0A1B0GWG4 89 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 PGPEP1LA6NFU8 196 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 F6UZH7 168 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 IGHV3-30P01768 117 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 IGHV3-33P01772 117 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 IGHV3-30-3P0DP02 117 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 IGHV3-30-5P0DP03 117 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 MGST1P10620 155 aaKnown RBP10.83□□□□□ -0.68
CLN3-208ENST00000561505 LRRC37A5PQ49AS3 106 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 LINC00528Q8N1L1 170 aa10.83□□□□□ -0.68
CLN3-208ENST00000561505 TRAV8-3A0A0A6YYJ7 113 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 TAAR5O14804 337 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 MPC2O95563 127 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 IGLV2-11P01706 119 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 RNASE3P12724 160 aaKnown RBP10.82□□□□□ -0.68
CLN3-208ENST00000561505 ZFP2Q6ZN57 461 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 SH3BGRL3Q9H299 93 aa10.82□□□□□ -0.68
CLN3-208ENST00000561505 EIF3GO75821 320 aaKnown RBP eCLIP10.81□□□□□ -0.68
CLN3-208ENST00000561505 ZNF506Q5JVG8 444 aa10.81□□□□□ -0.68
CLN3-208ENST00000561505 Q8N3U1 123 aa10.81□□□□□ -0.68
CLN3-208ENST00000561505 SCGB1C1Q8TD33 95 aa10.81□□□□□ -0.68
CLN3-208ENST00000561505 WFDC1Q9HC57 220 aa10.81□□□□□ -0.68
CLN3-208ENST00000561505 RPL12P30050 165 aaKnown RBP10.8□□□□□ -0.68
CLN3-208ENST00000561505 GNG5P63218 68 aa10.8□□□□□ -0.68
CLN3-208ENST00000561505 ACOT6Q3I5F7 207 aaPredicted RBP10.8□□□□□ -0.68
CLN3-208ENST00000561505 UFSP1Q6NVU6 142 aa10.8□□□□□ -0.68
CLN3-208ENST00000561505 LINC00479Q96M42 142 aa10.8□□□□□ -0.68
CLN3-208ENST00000561505 COX11Q9Y6N1 276 aa10.8□□□□□ -0.68
CLN3-208ENST00000561505 FAT3Q8TDW7 4589 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 RNF222A6NCQ9 220 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 TCRAP04437 139 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 SERTAD4-AS1Q5TG53 156 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 C5orf17Q8NAS9 161 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms