RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TYMSP04818 313 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 STAG3L2P0CL84 134 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 STAG3L3P0CL85 134 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 ATP6V0CP27449 155 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 GCHFRP30047 84 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 ZNF80P51504 273 aaPredicted RBP6.96□□□□□ -1.3
LDLR-214ENST00000560628 WFDC10BQ8IUB3 73 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 ARL6IP6Q8N6S5 226 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 SH3BGRL3Q9H299 93 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 SDF2L1Q9HCN8 221 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 BATF3Q9NR55 127 aa6.96□□□□□ -1.3
LDLR-214ENST00000560628 RYR1P21817 5038 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 TRAV9-2A0A087WT02 112 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 C9JCJ5 164 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 ORM1P02763 201 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 SUMO1P63165 101 aaKnown RBP6.95□□□□□ -1.3
LDLR-214ENST00000560628 OR2G3Q8NGZ4 309 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 ASB13Q8WXK3 278 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 AQP10Q96PS8 301 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 NDFIP1Q9BT67 221 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 C11orf21Q9P2W6 132 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 PSG8Q9UQ74 426 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 LY96Q9Y6Y9 160 aa6.95□□□□□ -1.3
LDLR-214ENST00000560628 TCRAP04437 139 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 PRNTQ86SH4 94 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 C5orf17Q8NAS9 161 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 NHLRC2Q8NBF2 726 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 SUN5Q8TC36 379 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 KCNS1Q96KK3 526 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 TXNDC17Q9BRA2 123 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 PSMG3Q9BT73 122 aaPredicted RBP6.94□□□□□ -1.3
LDLR-214ENST00000560628 ACTR3CQ9C0K3 210 aaPredicted RBP6.94□□□□□ -1.3
LDLR-214ENST00000560628 SCRT2Q9NQ03 307 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 EPDR1Q9UM22 224 aa6.94□□□□□ -1.3
LDLR-214ENST00000560628 HSPG2P98160 4391 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 IGHV3-73A0A0B4J1V6 119 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 K7EQM0 130 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 TAAR5O14804 337 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 EREGO14944 169 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 PTTG1O95997 202 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 CXorf1O96002 111 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 GCGP01275 180 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 IGLV2-11P01706 119 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 MBP02144 154 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 GATA1P15976 413 aaPredicted RBP6.93□□□□□ -1.3
LDLR-214ENST00000560628 EVI2AP22794 236 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 ERVFC1-1P60608 527 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 SERF2P84101 59 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 ZNF876PQ49A33 203 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 RPL7L1Q6DKI1 246 aaKnown RBP6.93□□□□□ -1.3
LDLR-214ENST00000560628 DPPA3Q6W0C5 159 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 NFE4Q86UQ8 179 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 TMEM75Q8N9X5 138 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 INO80EQ8NBZ0 244 aaPredicted RBP6.93□□□□□ -1.3
LDLR-214ENST00000560628 LINC00479Q96M42 142 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 TMEM167BQ9NRX6 74 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 PGPEP1Q9NXJ5 209 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 MSRB1Q9NZV6 116 aa6.93□□□□□ -1.3
LDLR-214ENST00000560628 FXYD6-FXYD2A0A087WZ82 144 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 TRAV34A0A0B4J273 112 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 SERTM2A0A1B0GWG4 89 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 PGPEP1LA6NFU8 196 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 GGTLC3B5MD39 225 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 GIPP09681 153 aaPredicted RBP6.92□□□□□ -1.3
LDLR-214ENST00000560628 DNAH10OSP0CZ25 163 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 FLI1Q01543 452 aaPredicted RBP6.92□□□□□ -1.3
LDLR-214ENST00000560628 SMUG1Q53HV7 270 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 Q8N1X5 172 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 SLC25A29Q8N8R3 303 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 TNFSF18Q9UNG2 199 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 LRP1BQ9NZR2 4599 aa6.92□□□□□ -1.3
LDLR-214ENST00000560628 A0A087WTM6 91 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 FBLL1A6NHQ2 334 aaKnown RBP6.91□□□□□ -1.3
LDLR-214ENST00000560628 RS1O15537 224 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 CRYGDP07320 174 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 PFN1P07737 140 aaKnown RBP6.91□□□□□ -1.3
LDLR-214ENST00000560628 PPT1P50897 306 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 UBE2G2P60604 165 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 ZNF726P1Q15940 193 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 CFAP126Q5VTH2 177 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 CYB561D1Q8N8Q1 229 aa6.91□□□□□ -1.3
LDLR-214ENST00000560628 BORCS7-ASMTA0A0B4J1R7 106 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 RNF222A6NCQ9 220 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 IFNA7P01567 189 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 FGF8P55075 233 aaPredicted RBP6.9□□□□□ -1.3
LDLR-214ENST00000560628 ZFP69Q49AA0 526 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 ZNF506Q5JVG8 444 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 SAPCD1Q5SSQ6 148 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 SH2D6Q7Z4S9 175 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 C9orf85Q96MD7 179 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 PRADC1Q9BSG0 188 aa6.9□□□□□ -1.3
LDLR-214ENST00000560628 ABCA13Q86UQ4 5058 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 IGKV3D-20A0A0C4DH25 116 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 IGHV3-38A0A0C4DH36 116 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 A0A1W2PRE2 83 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 K7EP13 123 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 RNASE3P12724 160 aaKnown RBP6.89□□□□□ -1.31
LDLR-214ENST00000560628 Q6ZSN1 163 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 OR2T35Q8NGX2 323 aa6.89□□□□□ -1.31
LDLR-214ENST00000560628 TRAV8-6A0A0B4J262 113 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms