RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NAGKQ9UJ70 344 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 FABP5P3A8MUU1 101 aa9.22□□□□□ -0.93
NEDD8-208ENST00000560427 SPINK4O60575 86 aa9.22□□□□□ -0.93
NEDD8-208ENST00000560427 ATP5G1P05496 136 aa9.22□□□□□ -0.93
NEDD8-208ENST00000560427 ZNF80P51504 273 aaPredicted RBP9.22□□□□□ -0.93
NEDD8-208ENST00000560427 TMEM183AQ8IXX5 376 aa9.22□□□□□ -0.93
NEDD8-208ENST00000560427 SPXQ9BT56 116 aa9.22□□□□□ -0.93
NEDD8-208ENST00000560427 FAM162BQ5T6X4 162 aa9.21□□□□□ -0.94
NEDD8-208ENST00000560427 SMIM12Q96EX1 92 aa9.21□□□□□ -0.94
NEDD8-208ENST00000560427 IGHV4-4A0A075B6R2 117 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 TRGV1A0A0A0MS02 117 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 LCE6AA0A183 80 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 IGLL5B9A064 214 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 TYMSP04818 313 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 ZC2HC1AQ96GY0 325 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 NDUFAF3Q9BU61 184 aa9.2□□□□□ -0.94
NEDD8-208ENST00000560427 TRGV2A0A075B6R0 118 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 IGHV3-16A0A0C4DH30 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 GAGE12BA1L429 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 NDUFS6O75380 124 aaKnown RBP9.19□□□□□ -0.94
NEDD8-208ENST00000560427 GAGE7O76087 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 GAGE12FP0CL80 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 GAGE12GP0CL81 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 GAGE12IP0CL82 117 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 RPL35P42766 123 aaKnown RBP9.19□□□□□ -0.94
NEDD8-208ENST00000560427 TEX261Q6UWH6 196 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 Q6ZTI0 123 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 BAGE2Q86Y30 109 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 MDFICQ9P1T7 246 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 APLNQ9ULZ1 77 aa9.19□□□□□ -0.94
NEDD8-208ENST00000560427 KMT2CQ8NEZ4 4911 aaKnown RBP9.18□□□□□ -0.94
NEDD8-208ENST00000560427 HTN3P15516 51 aa9.18□□□□□ -0.94
NEDD8-208ENST00000560427 ZNF674Q2M3X9 581 aa9.18□□□□□ -0.94
NEDD8-208ENST00000560427 DYNC2H1Q8NCM8 4307 aaKnown RBP9.18□□□□□ -0.94
NEDD8-208ENST00000560427 RASL10AQ92737 203 aa9.18□□□□□ -0.94
NEDD8-208ENST00000560427 MLST8Q9BVC4 326 aa9.18□□□□□ -0.94
NEDD8-208ENST00000560427 C11orf21Q9P2W6 132 aa9.18□□□□□ -0.94
NEDD8-208ENST00000560427 RBFOX3A6NFN3 312 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 F5H768 121 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 TMEM250H0YL14 139 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 M0R2P5 195 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 GNRH2O43555 120 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 SH2D1AO60880 128 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 LINC01559Q495D7 138 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 ZNF506Q5JVG8 444 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 C15orf53Q8NAA6 179 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 LINC00476Q8WZB0 136 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 PTH2Q96A98 100 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 MED9Q9NWA0 146 aa9.17□□□□□ -0.94
NEDD8-208ENST00000560427 MRPL16Q9NX20 251 aaKnown RBP9.17□□□□□ -0.94
NEDD8-208ENST00000560427 TENM2Q9NT68 2774 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 IGKV3D-20A0A0C4DH25 116 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 B4DEV8 164 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 ASIPP42127 132 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 CRIP1P50238 77 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 CENPWQ5EE01 88 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 DNLZQ5SXM8 178 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 LGALS9CQ6DKI2 356 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 TMEM88Q6PEY1 159 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 C9orf85Q96MD7 179 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 BIN3Q9NQY0 253 aa9.16□□□□□ -0.94
NEDD8-208ENST00000560427 KRBOX1C9JBD0 128 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 H3BNG1 76 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 ORM1P02763 201 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 CXCL1P09341 107 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 S100A4P26447 101 aaKnown RBP9.15□□□□□ -0.94
NEDD8-208ENST00000560427 GNG4P50150 75 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 PIK3CD-AS1Q5SR53 167 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 NHLRC2Q8NBF2 726 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 FAM210AQ96ND0 272 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 DERL1Q9BUN8 251 aa9.15□□□□□ -0.94
NEDD8-208ENST00000560427 C9JCJ5 164 aa9.14□□□□□ -0.95
NEDD8-208ENST00000560427 CIDEAO60543 219 aa9.14□□□□□ -0.95
NEDD8-208ENST00000560427 RNASE3P12724 160 aaKnown RBP9.14□□□□□ -0.95
NEDD8-208ENST00000560427 SLAQ13239 276 aa9.14□□□□□ -0.95
NEDD8-208ENST00000560427 IL36BQ9NZH7 164 aa9.14□□□□□ -0.95
NEDD8-208ENST00000560427 PLECQ15149 4684 aaKnown RBP9.14□□□□□ -0.95
NEDD8-208ENST00000560427 TRAV4A0A0B4J268 109 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 M0R036 132 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 P0DMU3 169 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 FAM231AP0DMU4 169 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 FAM231CP0DMU5 169 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 MED14OSP0DP75 135 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 TOR2AQ5JU69 321 aa9.13□□□□□ -0.95
NEDD8-208ENST00000560427 EIF5A2Q9GZV4 153 aaKnown RBP9.13□□□□□ -0.95
NEDD8-208ENST00000560427 ALMS1Q8TCU4 4167 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 LY6G6CO95867 125 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 HOXA5P20719 270 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 OR5I1Q13606 314 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 ZNF876PQ49A33 203 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 PRR27Q6MZM9 219 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 PARLQ9H300 379 aa9.12□□□□□ -0.95
NEDD8-208ENST00000560427 TRBV20OR9-2A0A075B6H5 130 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 TRAV26-1A0A087WT03 109 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 RAB19A4D1S5 217 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 IGLV2-8P01709 118 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 SYT8Q8NBV8 401 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 OR4C5Q8NGB2 326 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 SMDT1Q9H4I9 107 aa9.11□□□□□ -0.95
NEDD8-208ENST00000560427 PRO0255Q9UI72 69 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms