RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 V9GYV3 84 aa4.75□□□□□ -1.65
SPG11-221ENST00000560299 PRKDCP78527 4128 aaKnown RBP4.74□□□□□ -1.65
SPG11-221ENST00000560299 TRAV12-3A0A0B4J271 114 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 A0A1W2PPQ1 181 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 A8MZ25 164 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 M0R2Z0 102 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 INSP01308 110 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 CXCL1P09341 107 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 S100A4P26447 101 aaKnown RBP4.74□□□□□ -1.65
SPG11-221ENST00000560299 CRIP1P50238 77 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 ZNF80P51504 273 aaPredicted RBP4.74□□□□□ -1.65
SPG11-221ENST00000560299 APOC4P55056 127 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 ZNF124Q15973 351 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 COX19Q49B96 90 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 OXLD1Q5BKU9 147 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 GFI1BQ5VTD9 330 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 TMEM88Q6PEY1 159 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 AMTNQ6UX39 209 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 LINC00322Q6ZN03 302 aaPredicted RBP4.74□□□□□ -1.65
SPG11-221ENST00000560299 TRPT1Q86TN4 253 aaKnown RBP4.74□□□□□ -1.65
SPG11-221ENST00000560299 TMEM256Q8N2U0 113 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 DEFB125Q8N687 156 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 TMEM208Q9BTX3 173 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 SRD5A3Q9H8P0 318 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 NAT8BQ9UHF3 227 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 NAGKQ9UJ70 344 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 URGCP-MRPS24S4R325 110 aa4.74□□□□□ -1.65
SPG11-221ENST00000560299 TGP01266 2768 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 TRAV12-2A0A075B6T6 113 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 IGHV1OR15-1A0A075B7D0 117 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 LOC102724200A0A096LPH7 203 aaPredicted RBP4.73□□□□□ -1.65
SPG11-221ENST00000560299 KIR2DL5BA0A0G2JN68 375 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 KIR2DL5BA0A0G2JPC4 375 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 SMIM27A0A1W2PRY6 76 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 F2Z2F3 143 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 ZNF324O75467 553 aaPredicted RBP4.73□□□□□ -1.65
SPG11-221ENST00000560299 SCO1O75880 301 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 S100A8P05109 93 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 RPL35AP18077 110 aaKnown RBP4.73□□□□□ -1.65
SPG11-221ENST00000560299 FOXA3P55318 350 aaPredicted RBP4.73□□□□□ -1.65
SPG11-221ENST00000560299 FXYD7P58549 80 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 CBLN2Q8IUK8 224 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 KIR2DL5AQ8N109 375 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 KIR2DL5BQ8NHK3 375 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 LINC01587Q99440 93 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 PYGO2Q9BRQ0 406 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 CSTL1Q9H114 145 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 XCL2Q9UBD3 114 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 GOLT1BQ9Y3E0 138 aa4.73□□□□□ -1.65
SPG11-221ENST00000560299 TRGV11A0A075B6L2 103 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 TRBV24-1A0A075B6N3 115 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 TMSB15BA0A087X1C1 80 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 A0A1B0GW15 77 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 CBY3A6NI87 242 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 HIGD1CA8MV81 97 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 CA1P00915 261 aaPredicted RBP4.72□□□□□ -1.65
SPG11-221ENST00000560299 ASIPP42127 132 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 FAM3BP58499 235 aaPredicted RBP4.72□□□□□ -1.65
SPG11-221ENST00000560299 RIGQ13278 110 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 ELOBQ15370 118 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 TDRG1Q3Y452 100 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 MUC21Q5SSG8 566 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 PRR9Q5T870 116 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 ATP5L2Q7Z4Y8 100 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 Q8N1Y9 231 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 FER1L6-AS1Q8NA97 138 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 NEU1Q99519 415 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 TPPP3Q9BW30 176 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 WFDC10AQ9H1F0 79 aa4.72□□□□□ -1.65
SPG11-221ENST00000560299 STAB2Q8WWQ8 2551 aa4.71□□□□□ -1.65
SPG11-221ENST00000560299 IGKV3D-20A0A0C4DH25 116 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 A0A1B0GUT8 65 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 GRIFINA4D1Z8 144 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1BA6NDE4 496 aaKnown RBP4.71□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1EA6NEQ0 496 aaKnown RBP4.71□□□□□ -1.66
SPG11-221ENST00000560299 G3V4G9 280 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 UBE2CO00762 179 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 CRXO43186 299 aaPredicted RBP4.71□□□□□ -1.66
SPG11-221ENST00000560299 OR5AL1P0C617 328 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1DP0C7P1 496 aaKnown RBP4.71□□□□□ -1.66
SPG11-221ENST00000560299 MED14OSP0DP75 135 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 HTN1P15515 57 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 TCL1AP56279 114 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 CACNG7P62955 275 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 KIR3DS1Q14943 382 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 ANXA2RQ3ZCQ2 193 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 DNLZQ5SXM8 178 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 WDR73Q6P4I2 378 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 RASL11AQ6T310 242 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 SMIM15Q7Z3B0 74 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.71□□□□□ -1.66
SPG11-221ENST00000560299 NUP35Q8NFH5 326 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 FAM210BQ96KR6 192 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 PGLYRP4Q96LB8 373 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 LINC00467Q9BRT7 94 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 PHLDA3Q9Y5J5 127 aa4.71□□□□□ -1.66
SPG11-221ENST00000560299 IGHV3OR16-12A0A075B7B8 117 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 TGIF2-C20orf24A0A0A6YYL0 155 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 COLCA2A8K830 154 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms