RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TAS2R45P59539 299 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 CYCSP99999 105 aaKnown RBP6.18□□□□□ -1.42
HDDC3-204ENST00000559834 TDRG1Q3Y452 100 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 FAM74A1Q5RGS3 127 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 Q6ZSN1 163 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 NHLRC2Q8NBF2 726 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 CMTM2Q8TAZ6 248 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 PHYHIPLQ96FC7 376 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 ATP5SQ99766 215 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 MARVELD1Q9BSK0 173 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 TMEM70Q9BUB7 260 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 NAGKQ9UJ70 344 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 TRAV21A0A0B4J279 112 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 IBA57-AS1B1ANH7 110 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 UBE2L3P68036 154 aaKnown RBP6.17□□□□□ -1.42
HDDC3-204ENST00000559834 KHDC3LQ587J8 217 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 LINC01556Q5JQF7 62 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 TCTE3Q8IZS6 198 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 SCGB1C1Q8TD33 95 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 PRADC1Q9BSG0 188 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 NMES1Q9C002 83 aa6.17□□□□□ -1.42
HDDC3-204ENST00000559834 DMBT1Q9UGM3 2413 aaPredicted RBP6.17□□□□□ -1.42
HDDC3-204ENST00000559834 IGHV3-16A0A0C4DH30 117 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 LRCOL1A6NCL2 159 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 PGPA6NDG6 321 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 GNRH2O43555 120 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 FFAR4Q5NUL3 377 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 ARL6IP6Q8N6S5 226 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 KCNS1Q96KK3 526 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 HYLS1Q96M11 299 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 SH3BGRL3Q9H299 93 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 SDF2L1Q9HCN8 221 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 OTORQ9NRC9 128 aa6.16□□□□□ -1.42
HDDC3-204ENST00000559834 LOC100131303A0A0U1RQF7 123 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 FBLL1A6NHQ2 334 aaKnown RBP6.15□□□□□ -1.42
HDDC3-204ENST00000559834 SMLR1H3BR10 107 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 J3QL48 77 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 C1QBP02746 253 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 GATA1P15976 413 aaPredicted RBP6.15□□□□□ -1.42
HDDC3-204ENST00000559834 LRRC37A5PQ49AS3 106 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 OR10J3Q5JRS4 329 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 Q8N814 137 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 TM2D2Q9BX73 214 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 TREM1Q9NP99 234 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 OR5AC2Q9NZP5 309 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 MBD2Q9UBB5 411 aa6.15□□□□□ -1.42
HDDC3-204ENST00000559834 TRBV6-4A0A1B0GX49 114 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 A0A1W2PPV4 95 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 SIX6O95475 246 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 PLA2G1BP04054 148 aaKnown RBP6.14□□□□□ -1.43
HDDC3-204ENST00000559834 RHOHQ15669 191 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 ZNF876PQ49A33 203 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 LELP1Q5T871 98 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 PQLC2Q6ZP29 291 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 ASB13Q8WXK3 278 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 NDFIP1Q9BT67 221 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 MED28Q9H204 178 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 Q9HAA7 133 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 RPH3ALQ9UNE2 315 aa6.14□□□□□ -1.43
HDDC3-204ENST00000559834 FLG2Q5D862 2391 aaPredicted RBP6.14□□□□□ -1.43
HDDC3-204ENST00000559834 H0YIZ8 118 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 IGHV3-30P01768 117 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 IGHV3-33P01772 117 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 TYMSP04818 313 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 PET100P0DJ07 73 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 IGHV3-30-3P0DP02 117 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 IGHV3-30-5P0DP03 117 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 NDUFA5Q16718 116 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 ACOT6Q3I5F7 207 aaPredicted RBP6.13□□□□□ -1.43
HDDC3-204ENST00000559834 GOLT1AQ6ZVE7 132 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 SLC25A29Q8N8R3 303 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 ATP6V0E2Q8NHE4 81 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 GTSF1LQ9H1H1 148 aa6.13□□□□□ -1.43
HDDC3-204ENST00000559834 APOBP04114 4563 aaKnown RBP6.13□□□□□ -1.43
HDDC3-204ENST00000559834 DNAH5Q8TE73 4624 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 TRAV8-3A0A0A6YYJ7 113 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 SERTM2A0A1B0GWG4 89 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 K7EQM0 130 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 TAAR5O14804 337 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 RS1O15537 224 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 MGST1P10620 155 aaKnown RBP6.12□□□□□ -1.43
HDDC3-204ENST00000559834 HAMPP81172 84 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 LAGE3Q14657 143 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 Q5BKY6 102 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 CFAP126Q5VTH2 177 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 SLC7A5P1Q8MH63 180 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 PPP1R1CQ8WVI7 109 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 HSPB11Q9Y547 144 aa6.12□□□□□ -1.43
HDDC3-204ENST00000559834 F6UZH7 168 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 RPL12P30050 165 aaKnown RBP6.11□□□□□ -1.43
HDDC3-204ENST00000559834 TOR2AQ5JU69 321 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 C9orf62Q8N4C0 152 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 PTH2Q96A98 100 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 TVP23CQ96ET8 276 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 SMIM3Q9BZL3 60 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 FAM30AQ9NZY2 134 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 COX11Q9Y6N1 276 aa6.11□□□□□ -1.43
HDDC3-204ENST00000559834 TRAV8-1A0A0A6YYK1 113 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 IGHV3-73A0A0B4J1V6 119 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 SSNA1O43805 119 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms