RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 OR4B1Q8NGF8 309 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 CLUHP3Q96NS8 147 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 SHANK2-AS3Q9BTD1 123 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 AAMDCQ9H7C9 122 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 TRAV9-1A0A075B6T8 112 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 NUDT3O95989 172 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 SLC25A5P05141 298 aaKnown RBP5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 S100A6P06703 90 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 GALR1P47211 349 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 RPL23P62829 140 aaKnown RBP5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 C1orf194Q5T5A4 169 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 SPATA31B1PQ5VZV4 182 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 PATE2Q6UY27 113 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 FXYD5Q96DB9 178 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 FMC1Q96HJ9 113 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 FAM167A-AS1Q96KT0 104 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 OTORQ9NRC9 128 aa5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 SRRM2Q9UQ35 2752 aaKnown RBP5.7□□□□□ -1.5
CCDC88C-214ENST00000557507 SCO2A0A1W2PP80 73 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 PLAC8L1A1L4L8 177 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 PGPA6NDG6 321 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 F5H768 121 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 H3BRN7 92 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 PEX7O00628 323 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 ZNF253O75346 499 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 RAB5AP20339 215 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 RPL35P42766 123 aaKnown RBP5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 RANP62826 216 aaKnown RBP5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 COX19Q49B96 90 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 SAMD13Q5VXD3 122 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 AMTNQ6UX39 209 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 LINC01551Q86U37 167 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 OR8I2Q8N0Y5 310 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 OR10G8Q8NGN5 311 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 BLNKQ8WV28 456 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 SFRP2Q96HF1 295 aa5.69□□□□□ -1.5
CCDC88C-214ENST00000557507 TRAV5A0A0B4J249 113 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 A0A0J9YX75 114 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 ZNF98A6NK75 572 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 COLCA2A8K830 154 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 LYRM9A8MSI8 78 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 A8MTW9 85 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 ZNF705GA8MUZ8 300 aaPredicted RBP5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 DEFB130BP0DP73 79 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 DEFB130AP0DP74 79 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 FUSP35637 526 aaKnown RBP eCLIP5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 CCL18P55774 89 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 ERVFC1-1P60608 527 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 TMEM183BQ1AE95 376 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 Q5VSD8 79 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 ISOC2Q96AB3 205 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 DAZAP1Q96EP5 407 aaKnown RBP5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 C20orf173Q96LM9 149 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 IGF2BP2-AS1Q96M15 143 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 TMEM208Q9BTX3 173 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 EPDR1Q9UM22 224 aa5.68□□□□□ -1.5
CCDC88C-214ENST00000557507 TRBV19A0A075B6N1 114 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 TRBV24-1A0A075B6N3 115 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 GGTLC3B5MD39 225 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 M0R2Z0 102 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 CRXO43186 299 aaPredicted RBP5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 EIF3GO75821 320 aaKnown RBP eCLIP5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 PYYP10082 97 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 BTF3P20290 206 aaKnown RBP5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 ID1P41134 155 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 RPS10P46783 165 aaKnown RBP5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 XGP55808 180 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 ELOBQ15370 118 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 CENPWQ5EE01 88 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 EBLN2Q6P2I7 272 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 BAGE2Q86Y30 109 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 ZNF503Q96F45 646 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 SLC50A1Q9BRV3 221 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 Q9H3A6 140 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 Q9H8V8 135 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 OSTCQ9NRP0 149 aa5.67□□□□□ -1.5
CCDC88C-214ENST00000557507 TRBV6-1A0A0K0K1D8 114 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 ISLRO14498 428 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 INSP01308 110 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 TCRAP04437 139 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 ATP5G1P05496 136 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 CT45A10P0DMU9 189 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 MGST1P10620 155 aaKnown RBP5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 AZU1P20160 251 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 SPINK13Q1W4C9 94 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 TTC32Q5I0X7 151 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 IBA57Q5T440 356 aaKnown RBP5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 OCC1Q8TAD7 63 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 C17orf77Q96MU5 243 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 NDFIP1Q9BT67 221 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 ZFP30Q9Y2G7 519 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 KLF12Q9Y4X4 402 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 URGCP-MRPS24S4R325 110 aa5.66□□□□□ -1.5
CCDC88C-214ENST00000557507 UBR4Q5T4S7 5183 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 A0A087X0K7 114 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 XKRY2A2RUG3 117 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 GCGP01275 180 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 IGLC2P0DOY2 106 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 SAPCD1Q5SSQ6 148 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 MORN5Q5VZ52 161 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms