RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 UFC1Q9Y3C8 167 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 C9orf139Q6ZV77 190 aa12.48□□□□□ -0.41
SHMT2-232ENST00000557487 CENPVL3A0A0U1RRI6 287 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 K7ERJ3 54 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 PPP1R17O96001 155 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 MED14OSP0DP75 135 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 UBE2E1P51965 193 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 ECSCRQ19T08 205 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 CCDC140Q96MF4 163 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 TEX48A0A1B0GUV7 120 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 OR11H12B2RN74 326 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 ATP6V0E1O15342 81 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 OR11H1Q8NG94 326 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 OR11H2Q8NH07 326 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 TOMM6Q96B49 74 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 LINC00477Q96M19 166 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 HIST1H4GQ99525 98 aa12.47□□□□□ -0.41
SHMT2-232ENST00000557487 TRBV7-3A0A075B6L6 115 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 IGHV3OR16-8A0A075B7F1 116 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 IGHV3-35A0A0C4DH35 117 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 LINC01549A6NIU2 74 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 M0R381 172 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 CLEC19AQ6UXS0 136 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 MAPKAPK5-AS1Q8N8E1 139 aa12.46□□□□□ -0.42
SHMT2-232ENST00000557487 MYMXA0A1B0GTQ4 84 aa12.45□□□□□ -0.42
SHMT2-232ENST00000557487 LY6HO94772 140 aa12.45□□□□□ -0.42
SHMT2-232ENST00000557487 RRN3P1Q2M238 152 aa12.45□□□□□ -0.42
SHMT2-232ENST00000557487 CHTOPQ9Y3Y2 248 aaKnown RBP12.45□□□□□ -0.42
SHMT2-232ENST00000557487 POLEQ07864 2286 aa12.45□□□□□ -0.42
SHMT2-232ENST00000557487 SAMD13Q5VXD3 122 aa12.45□□□□□ -0.42
SHMT2-232ENST00000557487 SPANXB1Q9NS25 103 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-232ENST00000557487 FASNP49327 2511 aaKnown RBP12.44□□□□□ -0.42
SHMT2-232ENST00000557487 SUMO2P61956 95 aaKnown RBP12.44□□□□□ -0.42
SHMT2-232ENST00000557487 CD300EQ496F6 205 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-232ENST00000557487 SCGB3A1Q96QR1 104 aa12.44□□□□□ -0.42
SHMT2-232ENST00000557487 SIGMAR1Q99720 223 aa12.44□□□□□ -0.42
SHMT2-232ENST00000557487 DPH3P1Q9H4G8 78 aa12.44□□□□□ -0.42
SHMT2-232ENST00000557487 NBASA2RRP1 2371 aa12.44□□□□□ -0.42
SHMT2-232ENST00000557487 PCNX1Q96RV3 2341 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 TRAV26-2A0A0B4J265 109 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 TRAV21A0A0B4J279 112 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 OVOL1O14753 267 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 GRNP28799 593 aaKnown RBP12.43□□□□□ -0.42
SHMT2-232ENST00000557487 ATP5G2Q06055 141 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 NEXN-AS1Q8NBZ9 246 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 ITLN2Q8WWU7 325 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-232ENST00000557487 C16orf92Q96LL3 132 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 UBR5O95071 2799 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-232ENST00000557487 TMEM238LA0A1B0GVL6 79 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 A6NJY4 79 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 FAM223BA6NKX1 122 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 FAM223AQ8IWN6 122 aa12.43□□□□□ -0.42
SHMT2-232ENST00000557487 HELZ2Q9BYK8 2649 aaKnown RBP12.42□□□□□ -0.42
SHMT2-232ENST00000557487 TRBV7-9A0A0J9YWB2 115 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 H3BVH4 76 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 CCL21O00585 134 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 CIDEAO60543 219 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 ZFP36P26651 326 aaKnown RBP12.42□□□□□ -0.42
SHMT2-232ENST00000557487 EFNA4P52798 201 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 GLMPQ8WWB7 406 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 SELENOKQ9Y6D0 94 aa12.42□□□□□ -0.42
SHMT2-232ENST00000557487 IGHV3-66A0A0C4DH42 116 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 GAGE13Q4V321 117 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 ASIPP42127 132 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 OR10J6PQ8NGY7 276 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 AJUBAQ96IF1 538 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 SPATA25Q9BR10 227 aa12.41□□□□□ -0.42
SHMT2-232ENST00000557487 CRIP2P52943 208 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-232ENST00000557487 RPL32P62910 135 aaKnown RBP12.4□□□□□ -0.42
SHMT2-232ENST00000557487 PAPPA-AS1Q5QFB9 102 aa12.4□□□□□ -0.42
SHMT2-232ENST00000557487 RASL10AQ92737 203 aa12.4□□□□□ -0.42
SHMT2-232ENST00000557487 IGHV1-69DA0A0B4J2H0 117 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 GAGE12HA6NDE8 117 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 HOXA3O43365 443 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-232ENST00000557487 SAA4P35542 130 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 ADORA2A-AS1P86434 159 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 WFDC2Q14508 124 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 ZFAND2AQ8N6M9 145 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 POM121L12Q8N7R1 296 aa12.39□□□□□ -0.43
SHMT2-232ENST00000557487 G3V318 75 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 S100A4P26447 101 aaKnown RBP12.38□□□□□ -0.43
SHMT2-232ENST00000557487 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 C5orf56Q8N8D9 126 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 ATP6V0E2Q8NHE4 81 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 SPOCK3Q9BQ16 436 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 PRO0461Q9UI25 63 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 PHLDA3Q9Y5J5 127 aa12.38□□□□□ -0.43
SHMT2-232ENST00000557487 IGHV3OR16-13A0A075B7E8 117 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 IGHV3-74A0A0B4J1X5 117 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 H3BMG7 143 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 LGALS1P09382 135 aaKnown RBP12.37□□□□□ -0.43
SHMT2-232ENST00000557487 LYRM7Q5U5X0 104 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 C2orf66Q6UXQ4 117 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 BAALCQ8WXS3 180 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 GCN1Q92616 2671 aaKnown RBP12.37□□□□□ -0.43
SHMT2-232ENST00000557487 BRI3O95415 125 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 AZU1P20160 251 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 SCGB2A2Q13296 93 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 C19orf54Q5BKX5 351 aa12.37□□□□□ -0.43
SHMT2-232ENST00000557487 PRR9Q5T870 116 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms