RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PAPPA-AS1	Q5QFB9	102 aa		12.4	□□□□□ -0.42
SHMT2-231	ENST00000557433	RASL10A	Q92737	203 aa		12.4	□□□□□ -0.42
SHMT2-231	ENST00000557433	RAX	Q9Y2V3	346 aa		12.4	□□□□□ -0.42
SHMT2-231	ENST00000557433	IGHV1-69D	A0A0B4J2H0	117 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	GAGE12H	A6NDE8	117 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	HOXA3	O43365	443 aa	Predicted RBP	12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	SAA4	P35542	130 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	TCF15	Q12870	199 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	WFDC2	Q14508	124 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	ZFAND2A	Q8N6M9	145 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433	POM121L12	Q8N7R1	296 aa		12.39	□□□□□ -0.43
SHMT2-231	ENST00000557433		G3V318	75 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	S100A4	P26447	101 aa	Known RBP	12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	APRG1	Q8IVJ8	170 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	C5orf56	Q8N8D9	126 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	ATP6V0E2	Q8NHE4	81 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	SPOCK3	Q9BQ16	436 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	PRO0461	Q9UI25	63 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	PHLDA3	Q9Y5J5	127 aa		12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	MAP1B	P46821	2468 aa	Known RBP	12.38	□□□□□ -0.43
SHMT2-231	ENST00000557433	IGHV3OR16-13	A0A075B7E8	117 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	IGHV3-74	A0A0B4J1X5	117 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433		H3BMG7	143 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	LGALS1	P09382	135 aa	Known RBP	12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	LYRM7	Q5U5X0	104 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	C2orf66	Q6UXQ4	117 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	BAALC	Q8WXS3	180 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	BRI3	O95415	125 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	AZU1	P20160	251 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	SCGB2A2	Q13296	93 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	C19orf54	Q5BKX5	351 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	PRR9	Q5T870	116 aa		12.37	□□□□□ -0.43
SHMT2-231	ENST00000557433	TPR	P12270	2363 aa	Known RBP	12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	TRAV41	A0A0B4J266	112 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	NDUFA4	O00483	81 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	ADORA2A-AS1	P86434	159 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	FAM19A4	Q96LR4	140 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	TSSC4	Q9Y5U2	329 aa	Predicted RBP	12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	ZFHX4	Q86UP3	3567 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	ACACA	Q13085	2346 aa		12.36	□□□□□ -0.43
SHMT2-231	ENST00000557433	NPFF	O15130	113 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	NXPH4	O95158	308 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	PRADC1	Q9BSG0	188 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	MOB4	Q9Y3A3	225 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	ARHGAP32	A7KAX9	2087 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	IGHV3-49	A0A0A0MS15	119 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	PRSS29P	A6NIE9	313 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	SOCS3	O14543	225 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	ARL3	P36405	182 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	NBL1	P41271	181 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	HERVK_113	P61574	105 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433	C20orf173	Q96LM9	149 aa		12.35	□□□□□ -0.43
SHMT2-231	ENST00000557433		H3BUA1	57 aa		12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	ETDB	Q3ZM63	59 aa		12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	MORN3	Q6PF18	240 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	DLX4	Q92988	240 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	SPAG8	Q99932	426 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	CYSLTR1	Q9Y271	337 aa		12.34	□□□□□ -0.43
SHMT2-231	ENST00000557433	ANKHD1	Q8IWZ3	2542 aa	Known RBP	12.33	□□□□□ -0.43
SHMT2-231	ENST00000557433	IGHV4OR15-8	A0A075B7B6	117 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433		A0A087WW49	117 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	ZNF815P	A8K554	130 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	UBE2D1	P51668	147 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	RNF223	E7ERA6	249 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	COX6B1	P14854	86 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	ANXA2R	Q3ZCQ2	193 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	C14orf178	Q8N769	122 aa	Predicted RBP	12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	TMEM141	Q96I45	108 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	GTSF1L	Q9H1H1	148 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	KLK15	Q9H2R5	256 aa		12.33	□□□□□ -0.44
SHMT2-231	ENST00000557433	LINC01548	A6NM66	108 aa		12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	NDUFS8	O00217	210 aa		12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433		Q6ZQT7	251 aa		12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	RPL39L	Q96EH5	51 aa	Known RBP	12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	USMG5	Q96IX5	58 aa		12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	MRPL16	Q9NX20	251 aa	Known RBP	12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	PGPEP1	Q9NXJ5	209 aa		12.32	□□□□□ -0.44
SHMT2-231	ENST00000557433	MGP	P08493	103 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	SCGB1D4	Q6XE38	83 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	GPHB5	Q86YW7	130 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	ZZEF1	O43149	2961 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433		A0A1B0GV72	72 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	KLRB1	Q12918	225 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	AMTN	Q6UX39	209 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	LCNL1	Q6ZST4	164 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	SH2D6	Q7Z4S9	175 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	VCX2	Q9H322	139 aa		12.31	□□□□□ -0.44
SHMT2-231	ENST00000557433	SRSF9	Q13242	221 aa	Known RBP eCLIP	12.3	□□□□□ -0.44
SHMT2-231	ENST00000557433	C1QTNF4	Q9BXJ3	329 aa		12.3	□□□□□ -0.44
SHMT2-231	ENST00000557433	MUC6	Q6W4X9	2439 aa		12.3	□□□□□ -0.44
SHMT2-231	ENST00000557433	APOM	O95445	188 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	IGF1	P05019	195 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	LMO4	P61968	165 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	SMAGP	Q0VAQ4	97 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	CDSN	Q15517	529 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	CFAP126	Q5VTH2	177 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	TIMM17A	Q99595	171 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	CFAP47	Q6ZTR5	3102 aa		12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	ANKRD11	Q6UB99	2663 aa	Predicted RBP	12.29	□□□□□ -0.44
SHMT2-231	ENST00000557433	BOD1L1	Q8NFC6	3051 aa		12.29	□□□□□ -0.44

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