RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 IGHV4-4A0A075B6R2 117 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 TRBV6-1A0A0K0K1D8 114 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 FABP5P3A8MUU1 101 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 F5H768 121 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 LTAP01374 205 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 TYMSP04818 313 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 ATP5G1P05496 136 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 TAGLN2P37802 199 aaKnown RBP8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 BAGE2Q86Y30 109 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 ZC2HC1AQ96GY0 325 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 MED9Q9NWA0 146 aa8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 MRPL16Q9NX20 251 aaKnown RBP8.12□□□□□ -1.11
CCDC88C-212ENST00000556767 PDE6DO43924 150 aa8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 ORM1P02763 201 aa8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 RPL35P42766 123 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 TDRG1Q3Y452 100 aa8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 C11orf52Q96A22 123 aa8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 C11orf21Q9P2W6 132 aa8.11□□□□□ -1.11
CCDC88C-212ENST00000556767 IGHV3-16A0A0C4DH30 117 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 M0R036 132 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 SPINK4O60575 86 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 SH2D1AO60880 128 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 TCTAP57738 103 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 OR5I1Q13606 314 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 FAM162BQ5T6X4 162 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 TEX261Q6UWH6 196 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 LINC00612Q8N6U2 182 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 PCNPQ8WW12 178 aaKnown RBP8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 SPXQ9BT56 116 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 NDUFAF3Q9BU61 184 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 DERL1Q9BUN8 251 aa8.1□□□□□ -1.11
CCDC88C-212ENST00000556767 LCE6AA0A183 80 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 RAB19A4D1S5 217 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 RBFOX3A6NFN3 312 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 LY6G6CO95867 125 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 IGHV3-53P01767 116 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 S100A4P26447 101 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 CRIP1P50238 77 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 LGALS9BQ3B8N2 356 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 CENPWQ5EE01 88 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 PRR27Q6MZM9 219 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 TMEM88Q6PEY1 159 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 EIF5A2Q9GZV4 153 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 APLNQ9ULZ1 77 aa8.09□□□□□ -1.11
CCDC88C-212ENST00000556767 TMSB15BA0A087X1C1 80 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 IGKV3D-20A0A0C4DH25 116 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 B4DEV8 164 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 C9JCJ5 164 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 M0R2P5 195 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 MGST1P10620 155 aaKnown RBP8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 ASIPP42127 132 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 GNG4P50150 75 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 CEBPGP53567 150 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 ZNF674Q2M3X9 581 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 TOR2AQ5JU69 321 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 COX8CQ7Z4L0 72 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 LYPD6BQ8NI32 183 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 FAM210BQ96KR6 192 aa8.08□□□□□ -1.12
CCDC88C-212ENST00000556767 GRIFINA4D1Z8 144 aa8.07□□□□□ -1.12
CCDC88C-212ENST00000556767 ZNF506Q5JVG8 444 aa8.07□□□□□ -1.12
CCDC88C-212ENST00000556767 LINC00476Q8WZB0 136 aa8.07□□□□□ -1.12
CCDC88C-212ENST00000556767 A0A0J9YY99 117 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 KRBOX1C9JBD0 128 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 NUDT3O95989 172 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 HOXA5P20719 270 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 RASL10AQ92737 203 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 MLST8Q9BVC4 326 aa8.06□□□□□ -1.12
CCDC88C-212ENST00000556767 TRAV26-1A0A087WT03 109 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 PGPEP1LA6NFU8 196 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 H3BVH4 76 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 RPL19P84098 196 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 LINC01559Q495D7 138 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 ZNF876PQ49A33 203 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 OR4C5Q8NGB2 326 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 DAZAP1Q96EP5 407 aaKnown RBP8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 C9orf85Q96MD7 179 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 C18orf15Q96N68 181 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 FAM210AQ96ND0 272 aa8.05□□□□□ -1.12
CCDC88C-212ENST00000556767 TRGV4A0A0C4DH28 118 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 TMEM250H0YL14 139 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 SFTA3P0C7M3 94 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 ARMS2P0C7Q2 107 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 RNASE3P12724 160 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 LGALS9CQ6DKI2 356 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 UBE2DNLQ8IWF7 75 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 C15orf53Q8NAA6 179 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 ZNF479Q96JC4 524 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 PARLQ9H300 379 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 BIN3Q9NQY0 253 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 STARD9Q9P2P6 4700 aa8.04□□□□□ -1.12
CCDC88C-212ENST00000556767 IGLV2-8P01709 118 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 P0DMU3 169 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 FAM231AP0DMU4 169 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 FAM231CP0DMU5 169 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 RAB14P61106 215 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 SMIM12Q96EX1 92 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 IL36BQ9NZH7 164 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 PHLDA3Q9Y5J5 127 aa8.03□□□□□ -1.12
CCDC88C-212ENST00000556767 DNAH7Q8WXX0 4024 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 TRBV20OR9-2A0A075B6H5 130 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms