RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RNASEKQ6P5S7 137 aaKnown RBP19.74■□□□□ 0.75
CCDC88C-205ENST00000553403 OR9G4Q8NGQ1 327 aa19.74■□□□□ 0.75
CCDC88C-205ENST00000553403 URB1-AS1Q96HZ7 61 aa19.74■□□□□ 0.75
CCDC88C-205ENST00000553403 SNAI2O43623 268 aa19.73■□□□□ 0.75
CCDC88C-205ENST00000553403 OR5AL1P0C617 328 aa19.73■□□□□ 0.75
CCDC88C-205ENST00000553403 SSTP61278 116 aa19.73■□□□□ 0.75
CCDC88C-205ENST00000553403 MXRA5Q9NR99 2828 aa19.73■□□□□ 0.75
CCDC88C-205ENST00000553403 HILS1P60008 231 aa19.72■□□□□ 0.75
CCDC88C-205ENST00000553403 Q6ZQT7 251 aa19.72■□□□□ 0.75
CCDC88C-205ENST00000553403 AMN1Q8IY45 258 aa19.72■□□□□ 0.75
CCDC88C-205ENST00000553403 TRAV2A0A0B4J234 112 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 KLLNB2CW77 178 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 J3KRW8 73 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 SCGB1D1O95968 90 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 CACNG7P62955 275 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 NAGKQ9UJ70 344 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 IGHV4-4A0A075B6R2 117 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 A0A0J9YX75 114 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 RNASE4P34096 147 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 MRPL51Q4U2R6 128 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 FAM19A2Q8N3H0 131 aa19.71■□□□□ 0.75
CCDC88C-205ENST00000553403 LINC00614P0C842 121 aa19.7■□□□□ 0.74
CCDC88C-205ENST00000553403 LEPP41159 167 aa19.7■□□□□ 0.74
CCDC88C-205ENST00000553403 EBLN2Q6P2I7 272 aa19.69■□□□□ 0.74
CCDC88C-205ENST00000553403 ORMDL3Q8N138 153 aa19.69■□□□□ 0.74
CCDC88C-205ENST00000553403 LINC01006Q8NI28 216 aa19.69■□□□□ 0.74
CCDC88C-205ENST00000553403 DLX4Q92988 240 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-205ENST00000553403 MSRB1Q9NZV6 116 aa19.69■□□□□ 0.74
CCDC88C-205ENST00000553403 CSN3P07498 182 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 DUX3Q96PT4 197 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 D6R8Y8 96 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 M0R2Z0 102 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 DUSP14O95147 198 aaKnown RBP19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 MED14OSP0DP75 135 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 KRTAP21-3Q3LHN1 58 aa19.68■□□□□ 0.74
CCDC88C-205ENST00000553403 ANXA2RQ3ZCQ2 193 aa19.67■□□□□ 0.74
CCDC88C-205ENST00000553403 PRELID3AQ96N28 172 aa19.67■□□□□ 0.74
CCDC88C-205ENST00000553403 CD28P10747 220 aa19.66■□□□□ 0.74
CCDC88C-205ENST00000553403 FOXI2Q6ZQN5 318 aa19.66■□□□□ 0.74
CCDC88C-205ENST00000553403 OR10AG1Q8NH19 301 aa19.66■□□□□ 0.74
CCDC88C-205ENST00000553403 RNF185Q96GF1 192 aa19.66■□□□□ 0.74
CCDC88C-205ENST00000553403 JMJD8Q96S16 334 aa19.66■□□□□ 0.74
CCDC88C-205ENST00000553403 NDUFA7O95182 113 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 PPBPP02775 128 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 CD33P20138 364 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 ASIPP42127 132 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 FHL3Q13643 280 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 RAX2Q96IS3 184 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 RAB4AP20338 218 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 KRTDAPP60985 99 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 PKIAP61925 76 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 KIR3DS1Q14943 382 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 RNF114Q9Y508 228 aa19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 TSSC4Q9Y5U2 329 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-205ENST00000553403 TLN2Q9Y4G6 2542 aa19.64■□□□□ 0.74
CCDC88C-205ENST00000553403 H3BVH4 76 aa19.64■□□□□ 0.73
CCDC88C-205ENST00000553403 CKS2P33552 79 aa19.64■□□□□ 0.73
CCDC88C-205ENST00000553403 SMIM15Q7Z3B0 74 aa19.64■□□□□ 0.73
CCDC88C-205ENST00000553403 ANK3Q12955 4377 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-205ENST00000553403 INAFM1C9JVW0 142 aa19.63■□□□□ 0.73
CCDC88C-205ENST00000553403 SPANXN1Q5VSR9 72 aa19.63■□□□□ 0.73
CCDC88C-205ENST00000553403 DYNLRB2Q8TF09 96 aa19.63■□□□□ 0.73
CCDC88C-205ENST00000553403 C7orf71A4D174 169 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 TSPOP30536 169 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 SONP18583 2426 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 HIVEP2P31629 2446 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 C3orf79P0CE67 100 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 S100A4P26447 101 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 PRSS3P2Q8NHM4 247 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 LAMTOR2Q9Y2Q5 125 aa19.62■□□□□ 0.73
CCDC88C-205ENST00000553403 NSD1Q96L73 2696 aaPredicted RBP19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 IGHV1-24A0A0C4DH33 117 aa19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 CCL24O00175 119 aa19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 DEFB114Q30KQ6 69 aa19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 FA2HQ7L5A8 372 aa19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 SCRT2Q9NQ03 307 aa19.61■□□□□ 0.73
CCDC88C-205ENST00000553403 TSTD3H0UI37 97 aa19.6■□□□□ 0.73
CCDC88C-205ENST00000553403 HIST2H2BDQ6DRA6 164 aa19.6■□□□□ 0.73
CCDC88C-205ENST00000553403 TMEM61Q8N0U2 210 aa19.6■□□□□ 0.73
CCDC88C-205ENST00000553403 CITED2Q99967 270 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-205ENST00000553403 TEX43Q6ZNM6 134 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 ZNF664Q8N3J9 261 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 C11orf44Q8N8P7 122 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 Q8N976 141 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 AP5S1Q9NUS5 200 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 FAM159AQ6UWV7 190 aa19.59■□□□□ 0.73
CCDC88C-205ENST00000553403 A0A1W2PRX2 142 aa19.58■□□□□ 0.72
CCDC88C-205ENST00000553403 SIGLEC8Q9NYZ4 499 aa19.58■□□□□ 0.72
CCDC88C-205ENST00000553403 TRAV25A0A0B4J276 109 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 A8MTW9 85 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 LINC00587B1AMM8 73 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 SMKR1H3BMG3 65 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 GNRH2O43555 120 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 NPYP01303 97 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 EVI2AP22794 236 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 CDKN1BP46527 198 aa19.57■□□□□ 0.72
CCDC88C-205ENST00000553403 TCF21O43680 179 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 RNASE3P12724 160 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 IFI27P40305 119 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 DEFB131AP59861 70 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms