RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 IBA57Q5T440 356 aaKnown RBP9.67□□□□□ -0.86
PTCH1-217ENST00000548420 TMEM88Q6PEY1 159 aa9.67□□□□□ -0.86
PTCH1-217ENST00000548420 GSN-AS1Q9NRJ2 163 aa9.67□□□□□ -0.86
PTCH1-217ENST00000548420 TRAV8-1A0A0A6YYK1 113 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 GGTLC3B5MD39 225 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 IGLV2-11P01706 119 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 TCRAP04437 139 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 SEC11BP0C7V7 166 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 TCL1AP56279 114 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 FAM3BP58499 235 aaPredicted RBP9.66□□□□□ -0.86
PTCH1-217ENST00000548420 TP53TG3Q9ULZ0 132 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 EPDR1Q9UM22 224 aa9.66□□□□□ -0.86
PTCH1-217ENST00000548420 RGS13O14921 159 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 BCL2L11O43521 198 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 SPINK4O60575 86 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 TDRG1Q3Y452 100 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 C15orf53Q8NAA6 179 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 TMPRSS5Q9H3S3 457 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 RPH3ALQ9UNE2 315 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 KLF12Q9Y4X4 402 aa9.65□□□□□ -0.86
PTCH1-217ENST00000548420 GAGE12BA1L429 117 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 F5H768 121 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 GAGE7O76087 117 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 GAGE12FP0CL80 117 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 GAGE12GP0CL81 117 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 GAGE12IP0CL82 117 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 Q6ZTI0 123 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 TCTE3Q8IZS6 198 aa9.64□□□□□ -0.87
PTCH1-217ENST00000548420 FBLL1A6NHQ2 334 aaKnown RBP9.63□□□□□ -0.87
PTCH1-217ENST00000548420 FAM74A7A6NL05 159 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 UMAD1C9J7I0 102 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 FHITP49789 147 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 TMUB2Q71RG4 321 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 MBD3L1Q8WWY6 194 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 NKX6-2Q9C056 277 aaPredicted RBP9.63□□□□□ -0.87
PTCH1-217ENST00000548420 TREM1Q9NP99 234 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 PGPEP1Q9NXJ5 209 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 PSG8Q9UQ74 426 aa9.63□□□□□ -0.87
PTCH1-217ENST00000548420 TRAV21A0A0B4J279 112 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 KANTRA0A1W2PQU2 76 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 MAP1LC3B2A6NCE7 125 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 K7EQM0 130 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 HOXA5P20719 270 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 FGF8P55075 233 aaPredicted RBP9.62□□□□□ -0.87
PTCH1-217ENST00000548420 LGALSLQ3ZCW2 172 aaPredicted RBP9.62□□□□□ -0.87
PTCH1-217ENST00000548420 MUC21Q5SSG8 566 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 CYB561D1Q8N8Q1 229 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 TMEM75Q8N9X5 138 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 SGK494Q96LW2 274 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 ATG101Q9BSB4 218 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 ZNF471Q9BX82 626 aaPredicted RBP9.62□□□□□ -0.87
PTCH1-217ENST00000548420 MAP1LC3BQ9GZQ8 125 aa9.62□□□□□ -0.87
PTCH1-217ENST00000548420 H3BNG1 76 aa9.61□□□□□ -0.87
PTCH1-217ENST00000548420 EIF5AP63241 154 aaKnown RBP9.61□□□□□ -0.87
PTCH1-217ENST00000548420 FLI1Q01543 452 aaPredicted RBP9.61□□□□□ -0.87
PTCH1-217ENST00000548420 FAM159AQ6UWV7 190 aa9.61□□□□□ -0.87
PTCH1-217ENST00000548420 STOML3Q8TAV4 291 aa9.61□□□□□ -0.87
PTCH1-217ENST00000548420 TRGV1A0A0A0MS02 117 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 F6UZH7 168 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 ZNF80P51504 273 aaPredicted RBP9.6□□□□□ -0.87
PTCH1-217ENST00000548420 ZNF415Q09FC8 603 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 DPPA3Q6W0C5 159 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 IQCF2Q8IXL9 164 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 RASL10AQ92737 203 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 HIST1H2BAQ96A08 127 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 LINC00479Q96M42 142 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 SPXQ9BT56 116 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 NDFIP1Q9BT67 221 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 ARL2-SNX15V9GYD0 113 aa9.6□□□□□ -0.87
PTCH1-217ENST00000548420 DNAH8Q96JB1 4490 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 TRGV11A0A075B6L2 103 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 GNRH2O43555 120 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 C1QBP02746 253 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 ASIPP42127 132 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 UBE2G2P60604 165 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 OR5I1Q13606 314 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 TMEM183BQ1AE95 376 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 SAPCD1Q5SSQ6 148 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 TMEM183AQ8IXX5 376 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 C8orf49Q96NF6 230 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 C11orf21Q9P2W6 132 aa9.59□□□□□ -0.87
PTCH1-217ENST00000548420 TRGV2A0A075B6R0 118 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 TRAV26-1A0A087WT03 109 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 IGHV3-16A0A0C4DH30 117 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 PEX7O00628 323 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 IFNA7P01567 189 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 TPT1P13693 172 aaKnown RBP9.58□□□□□ -0.88
PTCH1-217ENST00000548420 SMUG1Q53HV7 270 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 COX8CQ7Z4L0 72 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 PRNTQ86SH4 94 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 DEFB104AQ8WTQ1 72 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 SFT2D1Q8WV19 159 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 KCNS1Q96KK3 526 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 TCEAL7Q9BRU2 100 aa9.58□□□□□ -0.88
PTCH1-217ENST00000548420 TRAV34A0A0B4J273 112 aa9.57□□□□□ -0.88
PTCH1-217ENST00000548420 PFDN1O60925 122 aa9.57□□□□□ -0.88
PTCH1-217ENST00000548420 NUDT3O95989 172 aa9.57□□□□□ -0.88
PTCH1-217ENST00000548420 GCGP01275 180 aa9.57□□□□□ -0.88
PTCH1-217ENST00000548420 TYMSP04818 313 aa9.57□□□□□ -0.88
PTCH1-217ENST00000548420 PFN1P07737 140 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms