RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	ZNF124	Q15973	351 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	SPINK13	Q1W4C9	94 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	RNF212	Q495C1	297 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504		Q8N1Y9	231 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	TMEM256	Q8N2U0	113 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	NUDT10	Q8NFP7	164 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	NUDT11	Q96G61	164 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	BTF3L4	Q96K17	158 aa		6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	RPP21	Q9H633	154 aa	Known RBP	6.99	□□□□□ -1.29
YBX3-215	ENST00000544504	TMEM189	A5PLL7	270 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	FAM231B	A6NCW3	169 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504		A8MZ25	164 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504		M0R2Z0	102 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	UBE2C	O00762	179 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	ORM1	P02763	201 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	CXCL1	P09341	107 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	S100P	P25815	95 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	GFI1B	Q5VTD9	330 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	FAM159A	Q6UWV7	190 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	OR2D3	Q8NGH3	330 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	IMMP2L	Q96T52	175 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	CSTL1	Q9H114	145 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	RNASE7	Q9H1E1	156 aa	Known RBP	6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	GOLT1B	Q9Y3E0	138 aa		6.98	□□□□□ -1.29
YBX3-215	ENST00000544504	TRAV12-3	A0A0B4J271	114 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	RBMY1B	A6NDE4	496 aa	Known RBP	6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	RBMY1E	A6NEQ0	496 aa	Known RBP	6.97	□□□□□ -1.29
YBX3-215	ENST00000544504		J3KRW8	73 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	RBMY1D	P0C7P1	496 aa	Known RBP	6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	RPL35A	P18077	110 aa	Known RBP	6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	CRIP1	P50238	77 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	ZNF80	P51504	273 aa	Predicted RBP	6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	BTN1A1	Q13410	526 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	LINC01559	Q495D7	138 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	KCNIP4	Q6PIL6	250 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	PYGO2	Q9BRQ0	406 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	LINC00467	Q9BRT7	94 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	TMEM208	Q9BTX3	173 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	GFRA4	Q9GZZ7	299 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	WFDC10A	Q9H1F0	79 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	SMCO4	Q9NRQ5	59 aa		6.97	□□□□□ -1.29
YBX3-215	ENST00000544504	TRAV9-1	A0A075B6T8	112 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504		A0A1W2PPQ1	181 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	CA1	P00915	261 aa	Predicted RBP	6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	IGHV4-30-4	P0DP06	118 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	TDRG1	Q3Y452	100 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	TSKU	Q8WUA8	353 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	IL36B	Q9NZH7	164 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	XCL2	Q9UBD3	114 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504		V9GYV3	84 aa		6.96	□□□□□ -1.3
YBX3-215	ENST00000544504	TRGV11	A0A075B6L2	103 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	TRAV12-2	A0A075B6T6	113 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	IGHV1OR15-1	A0A075B7D0	117 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	CRX	O43186	299 aa	Predicted RBP	6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	ZNF324	O75467	553 aa	Predicted RBP	6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	MED14OS	P0DP75	135 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	FXYD7	P58549	80 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	DNLZ	Q5SXM8	178 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	PRR9	Q5T870	116 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	LINC00322	Q6ZN03	302 aa	Predicted RBP	6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	BORCS7	Q96B45	105 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	LINC01587	Q99440	93 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	NAGK	Q9UJ70	344 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	AGRN	O00468	2067 aa		6.95	□□□□□ -1.3
YBX3-215	ENST00000544504	SMIM27	A0A1W2PRY6	76 aa		6.94	□□□□□ -1.3
YBX3-215	ENST00000544504		F2Z2F3	143 aa		6.94	□□□□□ -1.3
YBX3-215	ENST00000544504	S100A4	P26447	101 aa	Known RBP	6.94	□□□□□ -1.3
YBX3-215	ENST00000544504	ASIP	P42127	132 aa		6.94	□□□□□ -1.3
YBX3-215	ENST00000544504	NAT8B	Q9UHF3	227 aa		6.94	□□□□□ -1.3
YBX3-215	ENST00000544504	IGKV3D-20	A0A0C4DH25	116 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	SMIM9	A6NGZ8	99 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	CBY3	A6NI87	242 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	S100A8	P05109	93 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	FOXA3	P55318	350 aa	Predicted RBP	6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	KIR3DS1	Q14943	382 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	ANXA2R	Q3ZCQ2	193 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	MUC21	Q5SSG8	566 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	WDR73	Q6P4I2	378 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	ATRAID	Q6UW56	229 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	ZNF493	Q6ZR52	646 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504		Q6ZWC4	215 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	FER1L6-AS1	Q8NA97	138 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	C11orf21	Q9P2W6	132 aa		6.93	□□□□□ -1.3
YBX3-215	ENST00000544504	FRAS1	Q86XX4	4008 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	TMSB15B	A0A087X1C1	80 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504		A0A1B0GW15	77 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	HIGD1C	A8MV81	97 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	GIG44	P09565	113 aa	Predicted RBP	6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	OR5AL1	P0C617	328 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	ZNF415	Q09FC8	603 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	COX19	Q49B96	90 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	ZNF705A	Q6ZN79	300 aa	Predicted RBP	6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	ATP5L2	Q7Z4Y8	100 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	CSNK1G2-AS1	Q8NCQ2	148 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	NEU1	Q99519	415 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	TP53TG1	Q9Y2A0	90 aa		6.92	□□□□□ -1.3
YBX3-215	ENST00000544504	TRBV24-1	A0A075B6N3	115 aa		6.91	□□□□□ -1.3
YBX3-215	ENST00000544504		A0A1B0GUT8	65 aa		6.91	□□□□□ -1.3
YBX3-215	ENST00000544504	TYMS	P04818	313 aa		6.91	□□□□□ -1.3
YBX3-215	ENST00000544504	IGLC6	P0CF74	106 aa		6.91	□□□□□ -1.3

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