RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CDPF1Q6NVV7 123 aa8.97□□□□□ -0.97
RTN3-213ENST00000543552 Q6ZRN7 208 aaPredicted RBP8.97□□□□□ -0.97
RTN3-213ENST00000543552 ZNF479Q96JC4 524 aa8.97□□□□□ -0.97
RTN3-213ENST00000543552 PGPEP1Q9NXJ5 209 aa8.97□□□□□ -0.97
RTN3-213ENST00000543552 BOLA1Q9Y3E2 137 aa8.97□□□□□ -0.97
RTN3-213ENST00000543552 MBP02144 154 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 CDC34P49427 236 aaPredicted RBP8.96□□□□□ -0.98
RTN3-213ENST00000543552 KRTAP10-2P60368 255 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 RAB2AP61019 212 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 Q8N1X5 172 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 C10orf126Q8N4M7 172 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 OR2G3Q8NGZ4 309 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 ASB13Q8WXK3 278 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 WFDC1Q9HC57 220 aa8.96□□□□□ -0.98
RTN3-213ENST00000543552 IGHV3-16A0A0C4DH30 117 aa8.95□□□□□ -0.98
RTN3-213ENST00000543552 F6UZH7 168 aa8.95□□□□□ -0.98
RTN3-213ENST00000543552 ARL14EPLP0DKL9 152 aa8.95□□□□□ -0.98
RTN3-213ENST00000543552 ZFP69Q49AA0 526 aa8.95□□□□□ -0.98
RTN3-213ENST00000543552 C5orf17Q8NAS9 161 aa8.95□□□□□ -0.98
RTN3-213ENST00000543552 PSMG3Q9BT73 122 aaPredicted RBP8.95□□□□□ -0.98
RTN3-213ENST00000543552 TRAV8-1A0A0A6YYK1 113 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 FBLL1A6NHQ2 334 aaKnown RBP8.94□□□□□ -0.98
RTN3-213ENST00000543552 CIDEAO60543 219 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 EIF3GO75821 320 aaKnown RBP eCLIP8.94□□□□□ -0.981e-11■■■□□ 15.7
RTN3-213ENST00000543552 DNAH10OSP0CZ25 163 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 NHLRC2Q8NBF2 726 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 KRTAP4-5Q9BYR2 181 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 SCRT2Q9NQ03 307 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 MSRB1Q9NZV6 116 aa8.94□□□□□ -0.98
RTN3-213ENST00000543552 HMGB3O15347 200 aaKnown RBP8.93□□□□□ -0.98
RTN3-213ENST00000543552 GNRH2O43555 120 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 TYMSP04818 313 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 STAG3L2P0CL84 134 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 STAG3L3P0CL85 134 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 PPT1P50897 306 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 TIRAPP58753 221 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 GNG5P63218 68 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 SERF2P84101 59 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 HSD17B11Q8NBQ5 300 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 RAB24Q969Q5 203 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 AQP10Q96PS8 301 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 TMEM167BQ9NRX6 74 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 ALG5Q9Y673 324 aa8.93□□□□□ -0.98
RTN3-213ENST00000543552 TAAR5O14804 337 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 PTTG1O95997 202 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 CXorf1O96002 111 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 TCRAP04437 139 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 CRYGDP07320 174 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 GCHFRP30047 84 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 ZNF876PQ49A33 203 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 WFDC10BQ8IUB3 73 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 MED28Q9H204 178 aa8.92□□□□□ -0.98
RTN3-213ENST00000543552 GCGP01275 180 aa8.91□□□□□ -0.98
RTN3-213ENST00000543552 PFN1P07737 140 aaKnown RBP8.91□□□□□ -0.98
RTN3-213ENST00000543552 GATA1P15976 413 aaPredicted RBP8.91□□□□□ -0.98
RTN3-213ENST00000543552 SMUG1Q53HV7 270 aa8.91□□□□□ -0.98
RTN3-213ENST00000543552 CYB561D1Q8N8Q1 229 aa8.91□□□□□ -0.98
RTN3-213ENST00000543552 INO80EQ8NBZ0 244 aaPredicted RBP8.91□□□□□ -0.98
RTN3-213ENST00000543552 TVP23CQ96ET8 276 aa8.91□□□□□ -0.98
RTN3-213ENST00000543552 PRADC1Q9BSG0 188 aa8.91□□□□□ -0.98
RTN3-213ENST00000543552 ACTR3CQ9C0K3 210 aaPredicted RBP8.91□□□□□ -0.98
RTN3-213ENST00000543552 A0A087WTM6 91 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 TRAV8-6A0A0B4J262 113 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 IGHV3-38A0A0C4DH36 116 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 ATP6V0CP27449 155 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 FLI1Q01543 452 aaPredicted RBP8.9□□□□□ -0.98
RTN3-213ENST00000543552 RHOHQ15669 191 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 SAPCD1Q5SSQ6 148 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 TMEM75Q8N9X5 138 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 SUN5Q8TC36 379 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 SH3BGRL3Q9H299 93 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 TNFSF18Q9UNG2 199 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 PSG8Q9UQ74 426 aa8.9□□□□□ -0.98
RTN3-213ENST00000543552 BORCS7-ASMTA0A0B4J1R7 106 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 TRBV6-4A0A1B0GX49 114 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 PSCAO43653 123 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 SUMO1P63165 101 aaKnown RBP8.89□□□□□ -0.99
RTN3-213ENST00000543552 PTH2Q96A98 100 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 SGK494Q96LW2 274 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 EPDR1Q9UM22 224 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 TNFRSF18Q9Y5U5 241 aa8.89□□□□□ -0.99
RTN3-213ENST00000543552 A0A1W2PRE2 83 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 GGTLC3B5MD39 225 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 RS1O15537 224 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 GIPP09681 153 aaPredicted RBP8.88□□□□□ -0.99
RTN3-213ENST00000543552 MGST1P10620 155 aaKnown RBP8.88□□□□□ -0.99
RTN3-213ENST00000543552 LINC01556Q5JQF7 62 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 CFAP126Q5VTH2 177 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 PRNTQ86SH4 94 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 SLC25A29Q8N8R3 303 aa8.88□□□□□ -0.99
RTN3-213ENST00000543552 LOC100131303A0A0U1RQF7 123 aa8.87□□□□□ -0.99
RTN3-213ENST00000543552 EPM2AB3EWF7 344 aa8.87□□□□□ -0.99
RTN3-213ENST00000543552 ZNF80P51504 273 aaPredicted RBP8.87□□□□□ -0.99
RTN3-213ENST00000543552 OR10J3Q5JRS4 329 aa8.87□□□□□ -0.99
RTN3-213ENST00000543552 C9orf85Q96MD7 179 aa8.87□□□□□ -0.99
RTN3-213ENST00000543552 NKX6-2Q9C056 277 aaPredicted RBP8.87□□□□□ -0.99
RTN3-213ENST00000543552 IFNA7P01567 189 aa8.86□□□□□ -0.99
RTN3-213ENST00000543552 IGLV2-11P01706 119 aa8.86□□□□□ -0.99
RTN3-213ENST00000543552 S100A4P26447 101 aaKnown RBP8.86□□□□□ -0.99
RTN3-213ENST00000543552 ZNF506Q5JVG8 444 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms