RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 HBBP68871 147 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 RIGQ13278 110 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 KIR3DS1Q14943 382 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 ANXA2RQ3ZCQ2 193 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 MUC21Q5SSG8 566 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 RASL11AQ6T310 242 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 FAM159AQ6UWV7 190 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 TRPT1Q86TN4 253 aaKnown RBP5.45□□□□□ -1.54
VPS53-205ENST00000541903 FRZBQ92765 325 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 KCNS1Q96KK3 526 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 C11orf21Q9P2W6 132 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 WNK1Q9H4A3 2382 aa5.45□□□□□ -1.54
VPS53-205ENST00000541903 A0A1B0GW15 77 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 SNURFLB1AK76 121 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 F2Z2F3 143 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 WIPF1O43516 503 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 HLA-DQA1P01909 254 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 IGLC6P0CF74 106 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 S100A4P26447 101 aaKnown RBP5.44□□□□□ -1.54
VPS53-205ENST00000541903 CAMPP49913 170 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 PRR31Q5SQ13 230 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 LYZL1Q6UWQ5 148 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 Q6ZQT7 251 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 C20orf144Q9BQM9 153 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 GNB1LQ9BYB4 327 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 WFDC10AQ9H1F0 79 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 C19orf73Q9NVV2 129 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 TRAPPC1Q9Y5R8 145 aa5.44□□□□□ -1.54
VPS53-205ENST00000541903 TRGV11A0A075B6L2 103 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 IGHV1OR15-1A0A075B7D0 117 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 A0A1B0GXF2 115 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 H3BVH4 76 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 CRXO43186 299 aaPredicted RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 ZNF324O75467 553 aaPredicted RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 TRGC2P03986 189 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 ARMS2P0C7Q2 107 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 MED14OSP0DP75 135 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 RPL35AP18077 110 aaKnown RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 CACNG7P62955 275 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 MORN3Q6PF18 240 aaPredicted RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 TMEM136Q6ZRR5 245 aa5.43□□□□□ -1.54
VPS53-205ENST00000541903 MRPL18Q9H0U6 180 aaKnown RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 ZMAT5Q9UDW3 170 aaKnown RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 TIMM8BQ9Y5J9 83 aaPredicted RBP5.43□□□□□ -1.54
VPS53-205ENST00000541903 MUC21A0A0G2JKD1 596 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 MUC21A0A140T8X8 626 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 CBY3A6NI87 242 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 SNAI2O43623 268 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 OR5AL1P0C617 328 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 FABP9Q0Z7S8 132 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 TWIST1Q15672 202 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 TDRG1Q3Y452 100 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 DNLZQ5SXM8 178 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 SPANXN1Q5VSR9 72 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 ZFP82Q8N141 532 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 DEFB125Q8N687 156 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 TMEM208Q9BTX3 173 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 C1QTNF4Q9BXJ3 329 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 CNFNQ9BYD5 112 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 XCL2Q9UBD3 114 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 NF1P21359 2839 aa5.42□□□□□ -1.54
VPS53-205ENST00000541903 IGHV3-16A0A0C4DH30 117 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 GNRH2O43555 120 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 APCSP02743 223 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 FRMD6-AS1P0C7T7 363 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 RBMY1A1P0DJD3 496 aaKnown RBP5.41□□□□□ -1.54
VPS53-205ENST00000541903 RBMY1CP0DJD4 496 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 SSTP61278 116 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 RBMY1FQ15415 496 aaKnown RBP5.41□□□□□ -1.54
VPS53-205ENST00000541903 SMIM15Q7Z3B0 74 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 TMEM256Q8N2U0 113 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 GATD1Q8NB37 220 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 OR10AG1Q8NH19 301 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 LINC01587Q99440 93 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 LINC00467Q9BRT7 94 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 SSBP4Q9BWG4 385 aaPredicted RBP5.41□□□□□ -1.54
VPS53-205ENST00000541903 GOLT1BQ9Y3E0 138 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 PHLDA3Q9Y5J5 127 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 FBN3Q75N90 2809 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 ATRQ13535 2644 aa5.41□□□□□ -1.54
VPS53-205ENST00000541903 IGHV4-4A0A075B6R2 117 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 M0R381 172 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 S100A6P06703 90 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 TRGC1P0CF51 173 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 HTN1P15515 57 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 NTF3P20783 257 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 ZNF415Q09FC8 603 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 OXLD1Q5BKU9 147 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 ZNF575Q86XF7 245 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 Q8N1Y9 231 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 SYT8Q8NBV8 401 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 C9orf85Q96MD7 179 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 SCRT2Q9NQ03 307 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 TP53TG3Q9ULZ0 132 aa5.4□□□□□ -1.54
VPS53-205ENST00000541903 IGHV3OR16-12A0A075B7B8 117 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 LOC102724200A0A096LPH7 203 aaPredicted RBP5.39□□□□□ -1.55
VPS53-205ENST00000541903 PHOX2AO14813 284 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BKO60814 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BJP06899 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 RNASE3P12724 160 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms