RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 NPCDR1Q9BY65 106 aa5.02□□□□□ -1.61
YBX3-209ENST00000540747 SLC25A22Q9H936 323 aa5.02□□□□□ -1.61
YBX3-209ENST00000540747 WDR83OSQ9Y284 106 aa5.02□□□□□ -1.61
YBX3-209ENST00000540747 TIMM8BQ9Y5J9 83 aaPredicted RBP5.02□□□□□ -1.61
YBX3-209ENST00000540747 URGCP-MRPS24S4R325 110 aa5.02□□□□□ -1.61
YBX3-209ENST00000540747 A0A087X0K7 114 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 TGIF2-C20orf24A0A0A6YYL0 155 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 F6UZH7 168 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 H7BYZ3 331 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 MRPS12O15235 138 aaKnown RBP5.01□□□□□ -1.61
YBX3-209ENST00000540747 HMGB3O15347 200 aaKnown RBP5.01□□□□□ -1.61
YBX3-209ENST00000540747 PAGE4O60829 102 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 CXCL1P09341 107 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 GATA2P23769 480 aaPredicted RBP5.01□□□□□ -1.61
YBX3-209ENST00000540747 Q5VSD8 79 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 CDPF1Q6NVV7 123 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 CYP2G1PQ6ZSU1 146 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 RPUSD4Q96CM3 377 aaKnown RBP5.01□□□□□ -1.61
YBX3-209ENST00000540747 ANAPC16Q96DE5 110 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 LINC01587Q99440 93 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 TXNDC17Q9BRA2 123 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 SHANK2-AS3Q9BTD1 123 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 NPVFQ9HCQ7 196 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 NOP10Q9NPE3 64 aaKnown RBP5.01□□□□□ -1.61
YBX3-209ENST00000540747 NIT2Q9NQR4 276 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 PGPEP1Q9NXJ5 209 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 ZNF586Q9NXT0 402 aa5.01□□□□□ -1.61
YBX3-209ENST00000540747 LRP1Q07954 4544 aaKnown RBP5□□□□□ -1.61
YBX3-209ENST00000540747 PPP1R2P9O14990 202 aa5□□□□□ -1.61
YBX3-209ENST00000540747 PDE6DO43924 150 aa5□□□□□ -1.61
YBX3-209ENST00000540747 PLP1P60201 277 aa5□□□□□ -1.61
YBX3-209ENST00000540747 KRTAP10-1P60331 282 aa5□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H1AQ02539 215 aaPredicted RBP5□□□□□ -1.61
YBX3-209ENST00000540747 KIR3DS1Q14943 382 aa5□□□□□ -1.61
YBX3-209ENST00000540747 PSG3Q16557 428 aa5□□□□□ -1.61
YBX3-209ENST00000540747 CST9LP1Q5W188 147 aa5□□□□□ -1.61
YBX3-209ENST00000540747 TMEM144Q7Z5S9 345 aa5□□□□□ -1.61
YBX3-209ENST00000540747 ZNF738Q8NE65 137 aa5□□□□□ -1.61
YBX3-209ENST00000540747 OR10J6PQ8NGY7 276 aa5□□□□□ -1.61
YBX3-209ENST00000540747 VSIG2Q96IQ7 327 aa5□□□□□ -1.61
YBX3-209ENST00000540747 BTF3L4Q96K17 158 aa5□□□□□ -1.61
YBX3-209ENST00000540747 C20orf144Q9BQM9 153 aa5□□□□□ -1.61
YBX3-209ENST00000540747 FAT3Q8TDW7 4589 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 TRBV24-1A0A075B6N3 115 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 A0A096LPF7 62 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 A0A0J9YY99 117 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 CXorf1O96002 111 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 TRGC2P03986 189 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 RPL7P18124 248 aaKnown RBP4.99□□□□□ -1.61
YBX3-209ENST00000540747 ORM2P19652 201 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 FUSP35637 526 aaKnown RBP eCLIP4.99□□□□□ -1.61
YBX3-209ENST00000540747 CDKN1BP46527 198 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 RHOBP62745 196 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 RPL23P62829 140 aaKnown RBP4.99□□□□□ -1.61
YBX3-209ENST00000540747 MIC13Q5XKP0 118 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 KCNIP4Q6PIL6 250 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 C18orf15Q96N68 181 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 PARLQ9H300 379 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 OR51M1Q9H341 326 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 PXMP4Q9Y6I8 212 aa4.99□□□□□ -1.61
YBX3-209ENST00000540747 FNDC10F2Z333 226 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BKO60814 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BJP06899 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 PFN1P07737 140 aaKnown RBP4.98□□□□□ -1.61
YBX3-209ENST00000540747 TRGC1P0CF51 173 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BOP23527 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BBP33778 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BDP58876 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 UBE2G2P60604 165 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BCP62807 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 DAZ2Q13117 558 aaKnown RBP4.98□□□□□ -1.61
YBX3-209ENST00000540747 OR5I1Q13606 314 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST2H2BEQ16778 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.98□□□□□ -1.61
YBX3-209ENST00000540747 GFI1BQ5VTD9 330 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 TEPPQ6URK8 271 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 PATE2Q6UY27 113 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 FRZBQ92765 325 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BHQ93079 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BNQ99877 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIST1H2BMQ99879 126 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 ZNF331Q9NQX6 463 aaPredicted RBP4.98□□□□□ -1.61
YBX3-209ENST00000540747 HIGD1AQ9Y241 93 aa4.98□□□□□ -1.61
YBX3-209ENST00000540747 A0A087WTM6 91 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 GAGE12BA1L429 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 PRAC2D3DTV9 90 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 HYPMO75409 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 GAGE7O76087 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 GAGE12FP0CL80 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 GAGE12GP0CL81 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 GAGE12IP0CL82 117 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 STAG3L2P0CL84 134 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 STAG3L3P0CL85 134 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 DNAH10OSP0CZ25 163 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 PRB4P10163 310 aaPredicted RBP4.97□□□□□ -1.61
YBX3-209ENST00000540747 HTN1P15515 57 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 S100A7P31151 101 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 RPL29P47914 159 aaKnown RBP4.97□□□□□ -1.61
YBX3-209ENST00000540747 Q6ZTI0 123 aa4.97□□□□□ -1.61
YBX3-209ENST00000540747 C11orf72Q8NBR9 251 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms