RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RPL30P62888 115 aaKnown RBP2.09□□□□□ -2.07
CD44-229ENST00000528672 BLCAPP62952 87 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 UBE2L3P68036 154 aaKnown RBP2.09□□□□□ -2.07
CD44-229ENST00000528672 INSL4Q14641 139 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 ZFP2Q6ZN57 461 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 TIFABQ6ZNK6 161 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 Q6ZR03 302 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 C2orf91Q6ZV80 131 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 HMGN2P46Q86SG4 172 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 PDPNQ86YL7 162 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 SERP2Q8N6R1 65 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 AQP3Q92482 292 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 CYYR1Q96J86 154 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 NPCDR1Q9BY65 106 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 CYSTM1Q9H1C7 97 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 MANBALQ9NQG1 85 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 ANAPC11Q9NYG5 84 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 IL36BQ9NZH7 164 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 HIGD1BQ9P298 99 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 AHDC1Q5TGY3 1603 aaPredicted RBP2.09□□□□□ -2.08
CD44-229ENST00000528672 MYH8P13535 1937 aa2.09□□□□□ -2.08
CD44-229ENST00000528672 USP9XQ93008 2570 aaPredicted RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 EFCAB6Q5THR3 1501 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 KIAA0586Q9BVV6 1533 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 ARHGEF12Q9NZN5 1544 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 PLXNA4Q9HCM2 1894 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 UNC13BO14795 1591 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 VWDEQ8N2E2 1590 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 IGKV1-12A0A0C4DH73 117 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 A0A0D9SFI3 127 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 A0A1W2PQD3 144 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 CCL16O15467 120 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 IGKV1D-12P01611 117 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 CCKP06307 115 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 ASAH2BP0C7U1 165 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 COX8AP10176 69 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 S100A4P26447 101 aaKnown RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 CMC4P56277 68 aaPredicted RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 ATP5EP56381 51 aaPredicted RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 ZNF816Q0VGE8 651 aaPredicted RBP2.08□□□□□ -2.08
CD44-229ENST00000528672 LUZP6Q538Z0 58 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 PATE2Q6UY27 113 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 TMEM136Q6ZRR5 245 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 DAND5Q8N907 189 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 UBALD1Q8TB05 177 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 MGST2Q99735 147 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 CST11Q9H112 138 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 LY96Q9Y6Y9 160 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 KIAA0556O60303 1618 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 ZFHX4Q86UP3 3567 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 MROH2AA6NES4 1674 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 ROBO1Q9Y6N7 1651 aa2.08□□□□□ -2.08
CD44-229ENST00000528672 NKTRP30414 1462 aaKnown RBP2.07□□□□□ -2.08
CD44-229ENST00000528672 TANC1Q9C0D5 1861 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 SAMD9Q5K651 1589 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 MICAL3Q7RTP6 2002 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 DOCK8Q8NF50 2099 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 ZNF142P52746 1687 aaPredicted RBP2.07□□□□□ -2.08
CD44-229ENST00000528672 IGLV3-16A0A075B6K0 115 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 IGLV3-9A0A075B6K5 115 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 TRBV6-7A0A0A0MS04 114 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 IGHV1-3A0A0C4DH29 117 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 IGKV1-6A0A0C4DH72 117 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 A0A1B0GW54 56 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 E7EQL1 145 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 C19orf84I3L1E1 186 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 IGKV1-39P01597 117 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 IGKV1D-39P04432 117 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 CISD3P0C7P0 127 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 PTHLHP12272 177 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 FUSP35637 526 aaKnown RBP eCLIP2.07□□□□□ -2.08
CD44-229ENST00000528672 EFNA4P52798 201 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 PCBD1P61457 104 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 BSPH1Q075Z2 132 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 KISS1Q15726 138 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 LCE3AQ5TA76 89 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 Q5W150 140 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 ATP11AUNQ6ZP68 121 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 Q8N7P7 452 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 Q8N9L7 120 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 ZNF714Q96N38 554 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 TRGV9Q99603 122 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 RNF5Q99942 180 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 NXT2Q9NPJ8 142 aaKnown RBP2.07□□□□□ -2.08
CD44-229ENST00000528672 LINC00474Q9P2X8 69 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 TAC3Q9UHF0 121 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 CACNA1BQ00975 2339 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 RALGAPA2Q2PPJ7 1873 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 HELZP42694 1942 aaKnown RBP2.07□□□□□ -2.08
CD44-229ENST00000528672 ASXL1Q8IXJ9 1541 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 EHBP1L1Q8N3D4 1523 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 DLC1Q96QB1 1528 aa2.07□□□□□ -2.08
CD44-229ENST00000528672 ATG2BQ96BY7 2078 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 ANKRD17O75179 2603 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 MYO3AQ8NEV4 1616 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 FBN3Q75N90 2809 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 XRN1Q8IZH2 1706 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 WDR90Q96KV7 1748 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 ANKRD31Q8N7Z5 1873 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms