RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 SYCNQ0VAF6 134 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 MRPL51Q4U2R6 128 aaKnown RBP3.52□□□□□ -1.85
PCF11-202ENST00000528336 LINC01554Q52M75 96 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 AMTNQ6UX39 209 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 HMGN2P46Q86SG4 172 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 DEFB107AQ8IZN7 70 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 C8orf59Q8N0T1 100 aaPredicted RBP3.52□□□□□ -1.85
PCF11-202ENST00000528336 PACRGLQ8N7B6 248 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 MGLLQ99685 303 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 C11orf1Q9H5F2 150 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 XAGE1AQ9HD64 81 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 CYTL1Q9NRR1 136 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 FAIMQ9NVQ4 179 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 SCN3BQ9NY72 215 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 C21orf62Q9NYP8 219 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 BAIAP2Q9UQB8 552 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 LINC00588Q9Y4M8 146 aa3.52□□□□□ -1.85
PCF11-202ENST00000528336 SPENQ96T58 3664 aaKnown RBP3.51□□□□□ -1.85
PCF11-202ENST00000528336 LRRK2Q5S007 2527 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 EXPH5Q8NEV8 1989 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 UBR5O95071 2799 aaPredicted RBP3.51□□□□□ -1.85
PCF11-202ENST00000528336 IGKV1-9A0A0C4DH69 117 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 TMEM223A0PJW6 202 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 IGHV1-46P01743 117 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 LGALS3P17931 250 aaKnown RBP3.51□□□□□ -1.85
PCF11-202ENST00000528336 TGFBR1P36897 503 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 CSN1S1P47710 185 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 TSPEAR-AS2P59090 65 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 IGFBP7Q16270 282 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 ZFP2Q6ZN57 461 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 SPATA12Q7Z6I5 190 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 AP1S3Q96PC3 154 aa3.51□□□□□ -1.85
PCF11-202ENST00000528336 FASNP49327 2511 aaKnown RBP3.51□□□□□ -1.85
PCF11-202ENST00000528336 FLNCQ14315 2725 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 USP9XQ93008 2570 aaPredicted RBP3.5□□□□□ -1.85
PCF11-202ENST00000528336 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.5□□□□□ -1.85
PCF11-202ENST00000528336 IFITM5A6NNB3 132 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 C11orf94C9JXX5 98 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 ZNF670-ZNF695F2Z2N8 137 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 K7ERS5 55 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 CST7O76096 145 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 CRYGSP22914 178 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 NDUFA6P56556 154 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 QRFPP83859 136 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 FOXF1Q12946 379 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 ZNF880Q6PDB4 577 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 LINC00305Q7Z4B0 112 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 ZNF101Q8IZC7 436 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 ZNF563Q8TA94 476 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 POP5Q969H6 163 aaKnown RBP3.5□□□□□ -1.85
PCF11-202ENST00000528336 UPK3BQ9BT76 320 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 ZNRD1Q9P1U0 126 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 SHANK1Q9Y566 2161 aa3.5□□□□□ -1.85
PCF11-202ENST00000528336 DOPEY1Q5JWR5 2465 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 NINQ8N4C6 2090 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 IGLV4-69A0A075B6H9 119 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 A0A1B0GWA3 101 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 ZNF727A8MUV8 499 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 LEUTXA8MZ59 168 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 J3QKU1 62 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 TMEM256-PLSCR3K7ERE1 68 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 M0R143 59 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 CCL25O15444 150 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 CD28P10747 220 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 S100A4P26447 101 aaKnown RBP3.49□□□□□ -1.85
PCF11-202ENST00000528336 RNASE4P34096 147 aaKnown RBP3.49□□□□□ -1.85
PCF11-202ENST00000528336 RBM11P57052 281 aaKnown RBP3.49□□□□□ -1.85
PCF11-202ENST00000528336 YPEL3P61236 119 aaPredicted RBP3.49□□□□□ -1.85
PCF11-202ENST00000528336 BCL2L15Q5TBC7 163 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 ADM2Q7Z4H4 148 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.49□□□□□ -1.85
PCF11-202ENST00000528336 TERB2Q8NHR7 220 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 PP6455Q8WZ26 134 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 WFDC6Q9BQY6 131 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 TMEM191AQ9H0A3 160 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 FAM215AQ9Y5M1 114 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 ZNF407Q9C0G0 2248 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 RELNP78509 3460 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 HIVEP3Q5T1R4 2406 aa3.49□□□□□ -1.85
PCF11-202ENST00000528336 GCN1Q92616 2671 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 DNAJC13O75165 2243 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 IGKV1D-42A0A075B6H8 117 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 TRAV30A0A087WSZ9 112 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 A0A096LNJ9 63 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 A0A0J9YW62 118 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 ODAMA1E959 279 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 CPSF4LA6NMK7 179 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 A8MWP4 228 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 CRHBPP24387 322 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 GNG4P50150 75 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 AQP4P55087 323 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 FOXA3P55318 350 aaPredicted RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 HIST1H4AP62805 103 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 UBE2BP63146 152 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 RPL18Q07020 188 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 ESPL1Q14674 2120 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 OR5A2Q8NGI9 324 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 OR10AC1Q8NH08 325 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 SLC25A46Q96AG3 418 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 OR4C12Q96R67 309 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms