RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ZNF415Q09FC8 603 aa14.81□□□□□ -0.04
CD44-222ENST00000526025 CENPWQ5EE01 88 aa14.81□□□□□ -0.04
CD44-222ENST00000526025 C9JCJ5 164 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 CRIP1P50238 77 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 NANOS2P60321 138 aaKnown RBP14.8□□□□□ -0.04
CD44-222ENST00000526025 C12orf74Q32Q52 190 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 CLLU1Q5K131 121 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 LINC00612Q8N6U2 182 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 GSN-AS1Q9NRJ2 163 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 C11orf21Q9P2W6 132 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 NAGKQ9UJ70 344 aa14.8□□□□□ -0.04
CD44-222ENST00000526025 CSMD3Q7Z407 3707 aa14.79□□□□□ -0.04
CD44-222ENST00000526025 SH2D1AO60880 128 aa14.79□□□□□ -0.04
CD44-222ENST00000526025 TYMSP04818 313 aa14.79□□□□□ -0.04
CD44-222ENST00000526025 NOP10Q9NPE3 64 aaKnown RBP14.79□□□□□ -0.04
CD44-222ENST00000526025 IGLV2-8P01709 118 aa14.78□□□□□ -0.04
CD44-222ENST00000526025 NHLRC2Q8NBF2 726 aa14.78□□□□□ -0.04
CD44-222ENST00000526025 SPXQ9BT56 116 aa14.78□□□□□ -0.04
CD44-222ENST00000526025 PARLQ9H300 379 aa14.78□□□□□ -0.04
CD44-222ENST00000526025 BIN3Q9NQY0 253 aa14.78□□□□□ -0.04
CD44-222ENST00000526025 TRBV20OR9-2A0A075B6H5 130 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 IGHV3-16A0A0C4DH30 117 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 RAB19A4D1S5 217 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 NUPR2A6NF83 97 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 SRP19P09132 144 aaKnown RBP14.77□□□□□ -0.05
CD44-222ENST00000526025 PEA15Q15121 130 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 LGALS9BQ3B8N2 356 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 LINC01559Q495D7 138 aa14.77□□□□□ -0.05
CD44-222ENST00000526025 IGKV3D-20A0A0C4DH25 116 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 SPINK4O60575 86 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 DAD1P61803 113 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 DNLZQ5SXM8 178 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 Q6ZTC4 211 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 C18orf15Q96N68 181 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 MDFICQ9P1T7 246 aa14.76□□□□□ -0.05
CD44-222ENST00000526025 GNRH2O43555 120 aa14.75□□□□□ -0.05
CD44-222ENST00000526025 PHLDA1Q8WV24 401 aaPredicted RBP14.75□□□□□ -0.05
CD44-222ENST00000526025 LY96Q9Y6Y9 160 aa14.75□□□□□ -0.05
CD44-222ENST00000526025 STARD9Q9P2P6 4700 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 DYNC2H1Q8NCM8 4307 aaKnown RBP14.74□□□□□ -0.05
CD44-222ENST00000526025 TRAV10A0A0B4J240 114 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 B4DEV8 164 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 KRBOX1C9JBD0 128 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 ORM1P02763 201 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 CXCL1P09341 107 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 CASC10Q5T4H9 136 aa14.74□□□□□ -0.05
CD44-222ENST00000526025 CEMP1Q6PRD7 247 aaPredicted RBP14.74□□□□□ -0.05
CD44-222ENST00000526025 DEFB130BP0DP73 79 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 DEFB130AP0DP74 79 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 FAM74A3Q4VXF1 159 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 Q6ZTI0 123 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 PTH2Q96A98 100 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 C9orf85Q96MD7 179 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 SMIM7Q9BQ49 75 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 NDUFAF3Q9BU61 184 aa14.72□□□□□ -0.05
CD44-222ENST00000526025 MUC4Q99102 2169 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 TRGV1A0A0A0MS02 117 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 C19orf71A6NCJ1 209 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 M0R2P5 195 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 MGST1P10620 155 aaKnown RBP14.71□□□□□ -0.05
CD44-222ENST00000526025 ASIPP42127 132 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 ZFAND6Q6FIF0 208 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 PRR27Q6MZM9 219 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 RASL10AQ92737 203 aa14.71□□□□□ -0.05
CD44-222ENST00000526025 KLK5Q9Y337 293 aaPredicted RBP14.71□□□□□ -0.05
CD44-222ENST00000526025 DEFB131BA0A096LNP1 70 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 PGPEP1LA6NFU8 196 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 ZNF727A8MUV8 499 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 RNASE3P12724 160 aaKnown RBP14.7□□□□□ -0.06
CD44-222ENST00000526025 CEBPGP53567 150 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 SRSF3P84103 164 aaKnown RBP14.7□□□□□ -0.06
CD44-222ENST00000526025 OCC1Q8TAD7 63 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 IL36BQ9NZH7 164 aa14.7□□□□□ -0.06
CD44-222ENST00000526025 GAGE12BA1L429 117 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 C9JQL5 133 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 M0R036 132 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 GAGE7O76087 117 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 ATP5G1P05496 136 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 GAGE12FP0CL80 117 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 GAGE12GP0CL81 117 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 GAGE12IP0CL82 117 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 MED14OSP0DP75 135 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 PIK3CD-AS1Q5SR53 167 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 ZNF575Q86XF7 245 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 DAZAP1Q96EP5 407 aaKnown RBP14.69□□□□□ -0.06
CD44-222ENST00000526025 FAM210BQ96KR6 192 aa14.69□□□□□ -0.06
CD44-222ENST00000526025 S100A4P26447 101 aaKnown RBP14.68□□□□□ -0.06
CD44-222ENST00000526025 OR5I1Q13606 314 aa14.68□□□□□ -0.06
CD44-222ENST00000526025 TRGV2A0A075B6R0 118 aa14.67□□□□□ -0.06
CD44-222ENST00000526025 K7EN84 100 aa14.67□□□□□ -0.06
CD44-222ENST00000526025 TCTAP57738 103 aa14.67□□□□□ -0.06
CD44-222ENST00000526025 RPS20P60866 119 aaKnown RBP14.67□□□□□ -0.06
CD44-222ENST00000526025 MRPL16Q9NX20 251 aaKnown RBP14.67□□□□□ -0.06
CD44-222ENST00000526025 TENM2Q9NT68 2774 aa14.66□□□□□ -0.06
CD44-222ENST00000526025 P01737 135 aa14.66□□□□□ -0.06
CD44-222ENST00000526025 SCRT2Q9NQ03 307 aa14.66□□□□□ -0.06
CD44-222ENST00000526025 FAM231DQ6ZW35 169 aa14.65□□□□□ -0.06
CD44-222ENST00000526025 LINC01551Q86U37 167 aa14.65□□□□□ -0.06
CD44-222ENST00000526025 NACAE9PAV3 2078 aa14.64□□□□□ -0.07
CD44-222ENST00000526025 TMSB15BA0A087X1C1 80 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms