RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TMEM256Q8N2U0 113 aa11.04□□□□□ -0.64
LSM1-203ENST00000520755 LINC01587Q99440 93 aa11.04□□□□□ -0.64
LSM1-203ENST00000520755 RNASE7Q9H1E1 156 aaKnown RBP11.04□□□□□ -0.64
LSM1-203ENST00000520755 EDA2RQ9HAV5 297 aa11.04□□□□□ -0.64
LSM1-203ENST00000520755 FABP5P3A8MUU1 101 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 RPL19P84098 196 aaKnown RBP11.03□□□□□ -0.64
LSM1-203ENST00000520755 TDRG1Q3Y452 100 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 LINC01559Q495D7 138 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 Q8NAQ8 132 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 PYGO2Q9BRQ0 406 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 LINC00467Q9BRT7 94 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 NAGKQ9UJ70 344 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 TP53TG3Q9ULZ0 132 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 MUC4Q99102 2169 aa11.03□□□□□ -0.64
LSM1-203ENST00000520755 IGHV1OR15-1A0A075B7D0 117 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 ZNF705GA8MUZ8 300 aaPredicted RBP11.02□□□□□ -0.65
LSM1-203ENST00000520755 M0R036 132 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 TYMSP04818 313 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 HTN1P15515 57 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 AZU1P20160 251 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 FAM231DQ6ZW35 169 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 NUDT10Q8NFP7 164 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 NUDT11Q96G61 164 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 WWC2-AS2Q96NR7 200 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 NEU1Q99519 415 aa11.02□□□□□ -0.65
LSM1-203ENST00000520755 SMIM9A6NGZ8 99 aa11.01□□□□□ -0.65
LSM1-203ENST00000520755 KRBOX1C9JBD0 128 aa11.01□□□□□ -0.65
LSM1-203ENST00000520755 RRN3P1Q2M238 152 aa11.01□□□□□ -0.65
LSM1-203ENST00000520755 C11orf68Q9H3H3 251 aaKnown RBP11.01□□□□□ -0.65
LSM1-203ENST00000520755 BIN3Q9NQY0 253 aa11.01□□□□□ -0.65
LSM1-203ENST00000520755 PLAC8L1A1L4L8 177 aa11□□□□□ -0.65
LSM1-203ENST00000520755 EMP1P54849 157 aa11□□□□□ -0.65
LSM1-203ENST00000520755 PNRC1Q12796 327 aaPredicted RBP11□□□□□ -0.65
LSM1-203ENST00000520755 IBA57Q5T440 356 aaKnown RBP11□□□□□ -0.65
LSM1-203ENST00000520755 FAM159AQ6UWV7 190 aa11□□□□□ -0.65
LSM1-203ENST00000520755 C11orf72Q8NBR9 251 aa11□□□□□ -0.65
LSM1-203ENST00000520755 RNASE8Q8TDE3 154 aaKnown RBP11□□□□□ -0.65
LSM1-203ENST00000520755 TMSB15BA0A087X1C1 80 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 B4DEV8 164 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 GNRH2O43555 120 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 P01737 135 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 ORM1P02763 201 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 IL17DQ8TAD2 202 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 SFRP2Q96HF1 295 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 RPP21Q9H633 154 aaKnown RBP10.99□□□□□ -0.65
LSM1-203ENST00000520755 OSTCQ9NRP0 149 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 V9GYV3 84 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 NACAE9PAV3 2078 aa10.99□□□□□ -0.65
LSM1-203ENST00000520755 STAB2Q8WWQ8 2551 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 IGHV3-16A0A0C4DH30 117 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 CBY3A6NI87 242 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 GZMBP10144 247 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 ERVFC1-1P60608 527 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 OR2D3Q8NGH3 330 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 TMEM263Q8WUH6 116 aaKnown RBP10.98□□□□□ -0.65
LSM1-203ENST00000520755 MDFICQ9P1T7 246 aa10.98□□□□□ -0.65
LSM1-203ENST00000520755 GRIFINA4D1Z8 144 aa10.97□□□□□ -0.65
LSM1-203ENST00000520755 TMEM189A5PLL7 270 aa10.97□□□□□ -0.65
LSM1-203ENST00000520755 DAZAP1Q96EP5 407 aaKnown RBP10.97□□□□□ -0.65
LSM1-203ENST00000520755 KCNS1Q96KK3 526 aa10.97□□□□□ -0.65
LSM1-203ENST00000520755 TRGV11A0A075B6L2 103 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 GATCO43716 136 aaKnown RBP10.96□□□□□ -0.65
LSM1-203ENST00000520755 APOC3P02656 99 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 CXCL1P09341 107 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 RNASE3P12724 160 aaKnown RBP10.96□□□□□ -0.65
LSM1-203ENST00000520755 RNF212Q495C1 297 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 DNLZQ5SXM8 178 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 OR10G8Q8NGN5 311 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 C11orf45Q8TAV5 145 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 C16orf74Q96GX8 76 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 C9orf85Q96MD7 179 aa10.96□□□□□ -0.65
LSM1-203ENST00000520755 H3BVH4 76 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 IGLC6P0CF74 106 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 TCL1AP56279 114 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 CT83Q5H943 113 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 C15orf54Q8N8G6 183 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 CLRN3Q8NCR9 226 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 GSN-AS1Q9NRJ2 163 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 CELA1Q9UNI1 258 aa10.95□□□□□ -0.66
LSM1-203ENST00000520755 CXorf65A6NEN9 183 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 ASIPP42127 132 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 NANOS2P60321 138 aaKnown RBP10.94□□□□□ -0.66
LSM1-203ENST00000520755 ZNF415Q09FC8 603 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 ZNF493Q6ZR52 646 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 MUC7Q8TAX7 377 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 GTSF1Q8WW33 167 aa10.94□□□□□ -0.66
LSM1-203ENST00000520755 RPS20P60866 119 aaKnown RBP10.93□□□□□ -0.66
LSM1-203ENST00000520755 FAM222AQ5U5X8 452 aa10.93□□□□□ -0.66
LSM1-203ENST00000520755 SCRT2Q9NQ03 307 aa10.93□□□□□ -0.66
LSM1-203ENST00000520755 DKK2Q9UBU2 259 aa10.93□□□□□ -0.66
LSM1-203ENST00000520755 SNURFLB1AK76 121 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 SNAI2O43623 268 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 ATP6V1G1O75348 118 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 ARMS2P0C7Q2 107 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 SPART-AS1P0CW21 52 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 ZFAND6Q6FIF0 208 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 ATRAIDQ6UW56 229 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 SVBPQ8N300 66 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 IL36BQ9NZH7 164 aa10.92□□□□□ -0.66
LSM1-203ENST00000520755 DNAH7Q8WXX0 4024 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms