RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CDH23Q9H251 3354 aa9.21□□□□□ -0.93
SYNPO-204ENST00000519664 K7EIM0 57 aa9.21□□□□□ -0.93
SYNPO-204ENST00000519664 MSMBP08118 114 aa9.21□□□□□ -0.93
SYNPO-204ENST00000519664 CD28P10747 220 aa9.21□□□□□ -0.93
SYNPO-204ENST00000519664 DLX4Q92988 240 aaPredicted RBP9.21□□□□□ -0.93
SYNPO-204ENST00000519664 IGHV1-69DA0A0B4J2H0 117 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 IGHV1-69P01742 117 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 CT83Q5H943 113 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 EPG5Q9HCE0 2579 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 EGR2P11161 476 aaPredicted RBP9.21□□□□□ -0.94
SYNPO-204ENST00000519664 CFAP161Q6P656 301 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 DYNAPQ8N1N2 210 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 PRO3102Q9H379 93 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 KLK9Q9UKQ9 250 aa9.21□□□□□ -0.94
SYNPO-204ENST00000519664 NBL1P41271 181 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 SMPXQ9UHP9 88 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 ZNF462Q96JM2 2506 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 P0C879 139 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 DUSP14O95147 198 aaKnown RBP9.2□□□□□ -0.94
SYNPO-204ENST00000519664 DEFB131AP59861 70 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 PEMTQ9UBM1 199 aa9.2□□□□□ -0.94
SYNPO-204ENST00000519664 TEX48A0A1B0GUV7 120 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 GAGE5Q13069 117 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 GAGE6Q13070 117 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 DAZAP2Q15038 168 aaPredicted RBP9.19□□□□□ -0.94
SYNPO-204ENST00000519664 TMEM95Q3KNT9 176 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 PHLDA1Q8WV24 401 aaPredicted RBP9.19□□□□□ -0.94
SYNPO-204ENST00000519664 LTAP01374 205 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 NSUN5P1Q3KNT7 163 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 LINC01559Q495D7 138 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 Q8NA96 180 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 USMG5Q96IX5 58 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 TMEM14CQ9P0S9 112 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 TNRC6AQ8NDV7 1962 aaKnown RBP9.19□□□□□ -0.94
SYNPO-204ENST00000519664 PRSS46E5RG02 174 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 DTX2Q86UW9 622 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 NRGNQ92686 78 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 CHAC1Q9BUX1 264 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 AGPAT4-IT1Q9H0P7 198 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 TRAV26-1A0A087WT03 109 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 GP9P14770 177 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 DEFB1P60022 68 aa9.19□□□□□ -0.94
SYNPO-204ENST00000519664 I3L2K1 104 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 IGHV4-39P01824 125 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 FOXE3Q13461 319 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 ANXA2RQ3ZCQ2 193 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 CGB3P0DN86 165 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 CGB7P0DN87 165 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 CRYBA4P53673 196 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 BLCAPP62952 87 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 KLHL30-AS1Q8NEE0 82 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 ZNF503Q96F45 646 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 WDFY4Q6ZS81 3184 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 IGLV1-47P01700 117 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 DKK2Q9UBU2 259 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 SS18L2Q9UHA2 77 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 ACANP16112 2415 aa9.18□□□□□ -0.94
SYNPO-204ENST00000519664 TRGV1A0A0A0MS02 117 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 IGHV7-81A0A0B4J1V7 117 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 TRAV8-4A0A0B4J246 113 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 GTSF1Q8WW33 167 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 FAM223BA6NKX1 122 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 IGLV2-23P01705 113 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 C2orf66Q6UXQ4 117 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 FAM223AQ8IWN6 122 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 IGHV3-16A0A0C4DH30 117 aa9.17□□□□□ -0.94
SYNPO-204ENST00000519664 PRRC2AP48634 2157 aaKnown RBP9.17□□□□□ -0.94
SYNPO-204ENST00000519664 SVIPQ8NHG7 77 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 SPXQ9BT56 116 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 MRPL35Q9NZE8 188 aaKnown RBP9.16□□□□□ -0.94
SYNPO-204ENST00000519664 XCL2Q9UBD3 114 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 VCYO14598 125 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 SIVA1O15304 175 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 CTSGP08311 255 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 RPL35AP18077 110 aaKnown RBP9.16□□□□□ -0.94
SYNPO-204ENST00000519664 IGHV4-61A0A0C4DH41 118 aa9.16□□□□□ -0.94
SYNPO-204ENST00000519664 ZFP36P26651 326 aaKnown RBP9.16□□□□□ -0.94
SYNPO-204ENST00000519664 B5MCH6 92 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 GNRH2O43555 120 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 TMEM101Q96IK0 257 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 HOXB4P17483 251 aaPredicted RBP9.15□□□□□ -0.94
SYNPO-204ENST00000519664 Q8N7P7 452 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 ZNF625Q96I27 306 aaPredicted RBP9.15□□□□□ -0.94
SYNPO-204ENST00000519664 TRGV4A0A0C4DH28 118 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 TEX22C9J3V5 150 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 PRAC2D3DTV9 90 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 ADORA2A-AS1P86434 159 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 PPDPFLQ8WWR9 84 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 C1orf159Q96HA4 380 aa9.15□□□□□ -0.94
SYNPO-204ENST00000519664 TRGV11A0A075B6L2 103 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE12JA6NER3 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE7O76087 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE12FP0CL80 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE12GP0CL81 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE12IP0CL82 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 GAGE4Q13068 117 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 CR1LQ2VPA4 569 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 SP5Q6BEB4 398 aaPredicted RBP9.15□□□□□ -0.95
SYNPO-204ENST00000519664 IGF2BP2-AS1Q96M15 143 aa9.15□□□□□ -0.95
SYNPO-204ENST00000519664 TP53TG1Q9Y2A0 90 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms