RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 GIPP09681 153 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 ARL14EPLP0DKL9 152 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 TAS2R45P59539 299 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 KRTAP10-1P60331 282 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 ACOT6Q3I5F7 207 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 TMEM75Q8N9X5 138 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 SPXQ9BT56 116 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 SH3BGRL3Q9H299 93 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 TREM1Q9NP99 234 aa7.54□□□□□ -1.2
LIMCH1-214ENST00000512228 A0A087WTM6 91 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 A0A1W2PPV4 95 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 M0R2P5 195 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 SLAQ13239 276 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 Q6ZSN1 163 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 HSD17B11Q8NBQ5 300 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 OR4C5Q8NGB2 326 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 CMTM2Q8TAZ6 248 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 SUN5Q8TC36 379 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 RAB24Q969Q5 203 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 LINC00479Q96M42 142 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 Q9UF83 564 aa7.53□□□□□ -1.2
LIMCH1-214ENST00000512228 TRGV11A0A075B6L2 103 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 IGHV3-73A0A0B4J1V6 119 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 TRAV4A0A0B4J268 109 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 STAG3L2P0CL84 134 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 STAG3L3P0CL85 134 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 ATP6V0CP27449 155 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 SRIP30626 198 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 PQLC2Q6ZP29 291 aa7.52□□□□□ -1.21
LIMCH1-214ENST00000512228 TRAV21A0A0B4J279 112 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 PGPEP1LA6NFU8 196 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 GGTLC3B5MD39 225 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 C9JCJ5 164 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 TCRAP04437 139 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 GATA1P15976 413 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 GCHFRP30047 84 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 SUMO1P63165 101 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 ZNF726P1Q15940 193 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 Q8N3U1 123 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 ARL6IP6Q8N6S5 226 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 SLC25A29Q8N8R3 303 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 PGPEP1Q9NXJ5 209 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 MSRB1Q9NZV6 116 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 PSG8Q9UQ74 426 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 LY96Q9Y6Y9 160 aa7.51□□□□□ -1.21
LIMCH1-214ENST00000512228 TRAV34A0A0B4J273 112 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 LRCOL1A6NCL2 159 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 RS1O15537 224 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 RNASE3P12724 160 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 CDC34P49427 236 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 HAMPP81172 84 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 CFAP126Q5VTH2 177 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 OR2G3Q8NGZ4 309 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 C9orf85Q96MD7 179 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 AQP10Q96PS8 301 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 EPDR1Q9UM22 224 aa7.5□□□□□ -1.21
LIMCH1-214ENST00000512228 IGKV3D-20A0A0C4DH25 116 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 GCGP01275 180 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 ORM1P02763 201 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 ZNF876PQ49A33 203 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 FAM74A1Q5RGS3 127 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 RPL7L1Q6DKI1 246 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 Q6ZNX1 250 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 PRNTQ86SH4 94 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 SDF2L1Q9HCN8 221 aa7.49□□□□□ -1.21
LIMCH1-214ENST00000512228 RNF222A6NCQ9 220 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 G3V3Q6 166 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 CRYGDP07320 174 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 CRIP1P50238 77 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 C5orf17Q8NAS9 161 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 INO80EQ8NBZ0 244 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 OR2T35Q8NGX2 323 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 PSMG3Q9BT73 122 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 SAMD10Q9BYL1 202 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 JPT2Q9H910 190 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 FAT1Q14517 4588 aa7.48□□□□□ -1.21
LIMCH1-214ENST00000512228 TRAV9-2A0A087WT02 112 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 IGHV3-38A0A0C4DH36 116 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 TAAR5O14804 337 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 SMR3BP02814 79 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 PFN1P07737 140 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 EVI2AP22794 236 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 ERVFC1-1P60608 527 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 FLI1Q01543 452 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 ZNF506Q5JVG8 444 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 NHLRC2Q8NBF2 726 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 PCNPQ8WW12 178 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 KCNS1Q96KK3 526 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 TXNDC17Q9BRA2 123 aa7.47□□□□□ -1.21
LIMCH1-214ENST00000512228 FBLL1A6NHQ2 334 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 IBA57-AS1B1ANH7 110 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 IGHV3-30P01768 117 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 IGHV3-33P01772 117 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 IGHV3-30-3P0DP02 117 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 IGHV3-30-5P0DP03 117 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 FGF8P55075 233 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 WFDC2Q14508 124 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 NFE4Q86UQ8 179 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 TNFSF18Q9UNG2 199 aa7.46□□□□□ -1.22
LIMCH1-214ENST00000512228 TRBV6-4A0A1B0GX49 114 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms