RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 RASL10AQ92737 203 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 CNOT1A5YKK6 2376 aaKnown RBP7□□□□□ -1.29
PDGFRA-208ENST00000509490 TRAV40A0A0B4J280 105 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 IGLL5B9A064 214 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 FOXC1Q12948 553 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 SPANXN1Q5VSR9 72 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 GTSCR1Q86UQ5 136 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 C20orf173Q96LM9 149 aa7□□□□□ -1.29
PDGFRA-208ENST00000509490 PIEZO2Q9H5I5 2752 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 G3V318 75 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 SAP30O75446 220 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 PRB4P10163 310 aaPredicted RBP6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 SCGB1A1P11684 91 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 PPIFP30405 207 aaKnown RBP6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 ANKHD1Q8IWZ3 2542 aaKnown RBP6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 MAPKAPK5-AS1Q8N8E1 139 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 KIF25-AS1Q9Y6Z4 181 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 LINC01548A6NM66 108 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 GCSHP23434 173 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 C16orf92Q96LL3 132 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 C12orf74Q32Q52 190 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 WFDC3Q8IUB2 231 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 ODF3Q96PU9 254 aa6.99□□□□□ -1.29
PDGFRA-208ENST00000509490 SMG1Q96Q15 3661 aaKnown RBP6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 MYMXA0A1B0GTQ4 84 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 IGHG2P01859 326 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 ASIPP42127 132 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 LINC00315P59091 139 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 RNF152Q8N8N0 203 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 OR10J6PQ8NGY7 276 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 KLLNB2CW77 178 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 K7EMT4 169 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 COX6B1P14854 86 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 PAPPA-AS1Q5QFB9 102 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 SPXQ9BT56 116 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 KRTAP3-3Q9BYR6 98 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 KRTAP3-2Q9BYR7 98 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 TMEM160Q9NX00 188 aa6.98□□□□□ -1.29
PDGFRA-208ENST00000509490 DMXL1Q9Y485 3027 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 ARHGAP32A7KAX9 2087 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 H3BVH4 76 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 IGHV1-69P01742 117 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 ARL3P36405 182 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 RRN3P1Q2M238 152 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 Q5PR19 223 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 TRBV6-5A0A0K0K1A5 114 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 NDUFS8O00217 210 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 RAB37Q96AX2 223 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 PRO0461Q9UI25 63 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 MGAQ8IWI9 3026 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 PCNX1Q96RV3 2341 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 BOD1L1Q8NFC6 3051 aa6.97□□□□□ -1.29
PDGFRA-208ENST00000509490 IGHV3OR16-8A0A075B7F1 116 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 TRAV26-2A0A0B4J265 109 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 IGHV3-35A0A0C4DH35 117 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 IGLV1-40P01703 118 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 RNASE3P12724 160 aaKnown RBP6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 RIPPLY3P57055 190 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 CFHR3Q02985 330 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 BAALCQ8WXS3 180 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 SCGB3A1Q96QR1 104 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 TTTY13Q9BZ97 58 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 UFC1Q9Y3C8 167 aa6.96□□□□□ -1.29
PDGFRA-208ENST00000509490 ACACAQ13085 2346 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 RP1L1Q8IWN7 2480 aaPredicted RBP6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 A6NDX4 124 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 OR11H12B2RN74 326 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 OR11H1Q8NG94 326 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 OR11H2Q8NH07 326 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 SPANXB1Q9NS25 103 aaPredicted RBP6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 IGHV3-66A0A0C4DH42 116 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 UBE2D1P51668 147 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 POLR2KP53803 58 aaKnown RBP6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 ATP6V0E2Q8NHE4 81 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 TMEM141Q96I45 108 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 ZNF479Q96JC4 524 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 BPESC1Q9GZL8 116 aa6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 NHP2Q9NX24 153 aaKnown RBP6.96□□□□□ -1.3
PDGFRA-208ENST00000509490 ASPMQ8IZT6 3477 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 LGALS1P09382 135 aaKnown RBP6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 LCNL1Q6ZST4 164 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 TIMM17AQ99595 171 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 TTC28Q96AY4 2481 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 TMEM89A2RUT3 159 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 IGIPA6NJ69 53 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 ANXA2RQ3ZCQ2 193 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 C2orf66Q6UXQ4 117 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 UNQ9165/PRO28630Q6UXU0 137 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 Q6ZQT7 251 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 SPATA25Q9BR10 227 aa6.95□□□□□ -1.3
PDGFRA-208ENST00000509490 K7ERJ3 54 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 NAA38Q9BRA0 125 aaKnown RBP6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 LGALS9O00182 355 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 CRYGDP07320 174 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 EDA2RQ9HAV5 297 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 PHLDA3Q9Y5J5 127 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 KALRNO60229 2985 aa6.94□□□□□ -1.3
PDGFRA-208ENST00000509490 PRSS29PA6NIE9 313 aa6.93□□□□□ -1.3
PDGFRA-208ENST00000509490 MORN3Q6PF18 240 aaPredicted RBP6.93□□□□□ -1.3
PDGFRA-208ENST00000509490 CEP250Q9BV73 2442 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms