RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 KCNS1Q96KK3 526 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 MED9Q9NWA0 146 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 KLF12Q9Y4X4 402 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 TRGV2A0A075B6R0 118 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 GNRH2O43555 120 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 PDE6DO43924 150 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 LTAP01374 205 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 TCL1AP56279 114 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 TEX261Q6UWH6 196 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 Q6ZTI0 123 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 BAGE2Q86Y30 109 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 C11orf72Q8NBR9 251 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 PCNPQ8WW12 178 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 ZC2HC1AQ96GY0 325 aa8.13□□□□□ -1.11
LIMCH1-210ENST00000509454 TRBV6-1A0A0K0K1D8 114 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 RBFOX3A6NFN3 312 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 FABP5P3A8MUU1 101 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 F5H768 121 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 ORM1P02763 201 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 TYMSP04818 313 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 RPL35P42766 123 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 CEBPGP53567 150 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 DAZ2Q13117 558 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 IBA57Q5T440 356 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 FAM162BQ5T6X4 162 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 EIF5A2Q9GZV4 153 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 MRPL16Q9NX20 251 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 MDFICQ9P1T7 246 aa8.12□□□□□ -1.11
LIMCH1-210ENST00000509454 M0R036 132 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 SH2D1AO60880 128 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 ATP5G1P05496 136 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 TOR2AQ5JU69 321 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 PRR27Q6MZM9 219 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 C11orf52Q96A22 123 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 DERL1Q9BUN8 251 aa8.11□□□□□ -1.11
LIMCH1-210ENST00000509454 IGHV4-4A0A075B6R2 117 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 TMSB15BA0A087X1C1 80 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 RAB19A4D1S5 217 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 B4DEV8 164 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 MGST1P10620 155 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 S100A4P26447 101 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 GNG4P50150 75 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 OR5I1Q13606 314 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 ZNF674Q2M3X9 581 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 TDRG1Q3Y452 100 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 CENPWQ5EE01 88 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 C11orf21Q9P2W6 132 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 DNAH7Q8WXX0 4024 aa8.1□□□□□ -1.11
LIMCH1-210ENST00000509454 IGHV3-16A0A0C4DH30 117 aa8.09□□□□□ -1.11
LIMCH1-210ENST00000509454 SPINK4O60575 86 aa8.09□□□□□ -1.11
LIMCH1-210ENST00000509454 IGHV3-53P01767 116 aa8.09□□□□□ -1.11
LIMCH1-210ENST00000509454 ZNF506Q5JVG8 444 aa8.09□□□□□ -1.11
LIMCH1-210ENST00000509454 SPXQ9BT56 116 aa8.09□□□□□ -1.11
LIMCH1-210ENST00000509454 ASIPP42127 132 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 LCE2CQ5TA81 110 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 LYPD6BQ8NI32 183 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 NDUFAF3Q9BU61 184 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 GRIFINA4D1Z8 144 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 C9JCJ5 164 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 M0R2P5 195 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 CRIP1P50238 77 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 RAB14P61106 215 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 LGALS9BQ3B8N2 356 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 TMEM88Q6PEY1 159 aa8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 DAZAP1Q96EP5 407 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-210ENST00000509454 IGKV3D-20A0A0C4DH25 116 aa8.07□□□□□ -1.12
LIMCH1-210ENST00000509454 LY6G6CO95867 125 aa8.07□□□□□ -1.12
LIMCH1-210ENST00000509454 COX8CQ7Z4L0 72 aa8.07□□□□□ -1.12
LIMCH1-210ENST00000509454 LINC00612Q8N6U2 182 aa8.07□□□□□ -1.12
LIMCH1-210ENST00000509454 FAM210AQ96ND0 272 aa8.07□□□□□ -1.12
LIMCH1-210ENST00000509454 A0A0J9YY99 117 aa8.06□□□□□ -1.12
LIMCH1-210ENST00000509454 PGPEP1LA6NFU8 196 aa8.06□□□□□ -1.12
LIMCH1-210ENST00000509454 KRBOX1C9JBD0 128 aa8.06□□□□□ -1.12
LIMCH1-210ENST00000509454 H3BVH4 76 aa8.06□□□□□ -1.12
LIMCH1-210ENST00000509454 APLNQ9ULZ1 77 aa8.06□□□□□ -1.12
LIMCH1-210ENST00000509454 TRGV4A0A0C4DH28 118 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 TMEM250H0YL14 139 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 NUDT3O95989 172 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 TCTAP57738 103 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 RPL19P84098 196 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 ZNF876PQ49A33 203 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 OR4C5Q8NGB2 326 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 FAM210BQ96KR6 192 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 MLST8Q9BVC4 326 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 PARLQ9H300 379 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 BIN3Q9NQY0 253 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 TENM2Q9NT68 2774 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 STARD9Q9P2P6 4700 aa8.05□□□□□ -1.12
LIMCH1-210ENST00000509454 TRAV26-1A0A087WT03 109 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 LCE6AA0A183 80 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 SFTA3P0C7M3 94 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 HOXA5P20719 270 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 PEA15Q15121 130 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 RASL10AQ92737 203 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 C9orf85Q96MD7 179 aa8.04□□□□□ -1.12
LIMCH1-210ENST00000509454 P01737 135 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 ARMS2P0C7Q2 107 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 RNASE3P12724 160 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 UBE2DNLQ8IWF7 75 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 SYT8Q8NBV8 401 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms