RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CRIPAKQ8N1N5 446 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 MPLKIPQ8TAP9 179 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 PAPPAQ13219 1627 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 IGHV3-38A0A0C4DH36 116 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 MDC1Q14676 2089 aaKnown RBP8.83□□□□□ -1
LIMCH1-208ENST00000508501 CTRLP40313 264 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 Q8NFD4 153 aa8.83□□□□□ -1
LIMCH1-208ENST00000508501 DOCK11Q5JSL3 2073 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 TRAV23DV6A0A075B6W5 121 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 NUPR1O60356 82 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 SAA4P35542 130 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 MIAQ16674 131 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 C3orf56Q8N813 242 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 MDS2Q8NDY4 140 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 DEFB105AQ8NG35 78 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 TCL1BO95988 128 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 RPL18AQ02543 176 aaKnown RBP8.82□□□□□ -1
LIMCH1-208ENST00000508501 IGF2BP2-AS1Q96M15 143 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 FANCD2OSQ96PS1 177 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 ECM29Q5VYK3 1845 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 LYNX1G3V0Z9 82 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 LYNX1P0DP58 116 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 ZNF503Q96F45 646 aa8.82□□□□□ -1
LIMCH1-208ENST00000508501 TAF1P21675 1872 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 TEX36Q5VZQ5 186 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 FAM110AQ9BQ89 295 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 FREM3P0C091 2139 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 NDUFA1O15239 70 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 CAMK2N2Q96S95 79 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 WISP1O95388 367 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 XCL1P47992 114 aa8.81□□□□□ -1
LIMCH1-208ENST00000508501 PIKFYVEQ9Y2I7 2098 aa8.8□□□□□ -1
LIMCH1-208ENST00000508501 LHBP01229 141 aa8.8□□□□□ -1
LIMCH1-208ENST00000508501 LINC01356Q8N9X3 169 aa8.8□□□□□ -1
LIMCH1-208ENST00000508501 C15orf65H3BRN8 121 aa8.8□□□□□ -1
LIMCH1-208ENST00000508501 TIMM17BO60830 172 aa8.8□□□□□ -1
LIMCH1-208ENST00000508501 TRBV30A0A0K0K1B3 111 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 RNF144BQ7Z419 303 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 ARHGEF17Q96PE2 2063 aaPredicted RBP8.79□□□□□ -1
LIMCH1-208ENST00000508501 THSD7AQ9UPZ6 1657 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 SMIM9A6NGZ8 99 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 C2orf70A6NJV1 201 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 C17orf58Q2M2W7 97 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 LINC00173Q6ZV60 143 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 SCN5AQ14524 2016 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 COL11A1P12107 1806 aaPredicted RBP8.79□□□□□ -1
LIMCH1-208ENST00000508501 A6NED7 52 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 BLCAPP62952 87 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 CLEC2BQ92478 149 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 SERP1Q9Y6X1 66 aa8.79□□□□□ -1
LIMCH1-208ENST00000508501 IGHV4-28A0A0C4DH34 117 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 CSRP1P21291 193 aaKnown RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 COX7BP24311 80 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 FHL1Q13642 323 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 SPTBN1Q01082 2364 aaKnown RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 J3QLI3 93 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 GP9P14770 177 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 LINC00205P59089 165 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 CASC2Q6XLA1 102 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 FAM19A3Q7Z5A8 133 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 COLQQ9Y215 455 aaPredicted RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 ARFGEF1Q9Y6D6 1849 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 IGKV2-29A2NJV5 120 aaPredicted RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 DAND5Q8N907 189 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 MDFICQ9P1T7 246 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 KAAG1Q9UBP8 84 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 C9orf47Q6ZRZ4 202 aa8.78□□□□□ -1
LIMCH1-208ENST00000508501 C17orf82Q86X59 251 aaPredicted RBP8.78□□□□□ -1
LIMCH1-208ENST00000508501 EP300Q09472 2414 aaPredicted RBP8.77□□□□□ -1
LIMCH1-208ENST00000508501 MPDZO75970 2070 aa8.77□□□□□ -1
LIMCH1-208ENST00000508501 CEP250Q9BV73 2442 aa8.77□□□□□ -1
LIMCH1-208ENST00000508501 PRB4P10163 310 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 B3GALT5-AS1P59052 145 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 C5orf38Q86SI9 138 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 PINLYPA6NC86 204 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 K7EQD1 137 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 TIRAPP58753 221 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 CLPSP04118 112 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 RNF138Q8WVD3 245 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 ZNF581Q9P0T4 197 aa8.77□□□□□ -1.01
LIMCH1-208ENST00000508501 C16orf74Q96GX8 76 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 MYO16Q9Y6X6 1858 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 IGLV3-1P01715 115 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 NCOR1O75376 2440 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 DOCK4Q8N1I0 1966 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 TEX22C9J3V5 150 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 CGB7P0DN87 165 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 C5orf24Q7Z6I8 188 aa8.76□□□□□ -1.01
LIMCH1-208ENST00000508501 WI2-2373I1.2A0A1W2PRP0 233 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 LYPD2Q6UXB3 125 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 SPRY4Q9C004 299 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 FANCMQ8IYD8 2048 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 ATAD5Q96QE3 1844 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 ARFGEF3Q5TH69 2177 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 TRBV10-1A0A0K0K1A3 114 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 PRB2P02812 416 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 RNASE13Q5GAN3 156 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 C20orf203Q8NBC4 194 aa8.75□□□□□ -1.01
LIMCH1-208ENST00000508501 CDK5RAP2Q96SN8 1893 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms