RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 PEX7O00628 323 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 CD7P09564 240 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 SFTA3P0C7M3 94 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 DEFB131AP59861 70 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 CKS1BP61024 79 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 GNG5P63218 68 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 PSMG4Q5JS54 123 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 KPRPQ5T749 579 aaPredicted RBP5.34□□□□□ -1.55
NUP54-204ENST00000506098 FOXI2Q6ZQN5 318 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 C9orf47Q6ZRZ4 202 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 Q8N1Y9 231 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 CYB561D1Q8N8Q1 229 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 TMEM75Q8N9X5 138 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 OR8A1Q8NGG7 326 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 GEMIN7Q9H840 131 aaKnown RBP5.34□□□□□ -1.55
NUP54-204ENST00000506098 TMEM242Q9NWH2 141 aa5.34□□□□□ -1.55
NUP54-204ENST00000506098 B4DEV8 164 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 C9JQL5 133 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 IGLV2-11P01706 119 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 HLA-DRB4P13762 266 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 RPS10P46783 165 aaKnown RBP5.33□□□□□ -1.56
NUP54-204ENST00000506098 KRTAP10-11P60412 298 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 TMEM183BQ1AE95 376 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 C4orf48Q5BLP8 95 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 GDF5OSQ5U4N7 250 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 GOLT1AQ6ZVE7 132 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 GTSCR1Q86UQ5 136 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 OR10J6PQ8NGY7 276 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 FMC1Q96HJ9 113 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 FAM19A4Q96LR4 140 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 LINC00477Q96M19 166 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 SIGMAR1Q99720 223 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 SLC35B3Q9H1N7 401 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 LENEPQ9Y5L5 61 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 HLA-DRB4X5D2U9 266 aa5.33□□□□□ -1.56
NUP54-204ENST00000506098 NBEAL1Q6ZS30 2694 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 NOTCH1P46531 2555 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 NACAE9PAV3 2078 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 IGKV2-40A0A087WW87 121 aaPredicted RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 F6UB75 175 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 H3BMM0 161 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 DUSP14O95147 198 aaKnown RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 IGKV2D-40P01614 121 aaPredicted RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 CNN1P51911 297 aaKnown RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 DEFB1P60022 68 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 EBLN2Q6P2I7 272 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 ZNF705AQ6ZN79 300 aaPredicted RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 COX8CQ7Z4L0 72 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 APRG1Q8IVJ8 170 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 LINC00479Q96M42 142 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 ODF3Q96PU9 254 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 VGLL1Q99990 258 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 AGPAT4-IT1Q9H0P7 198 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 PARLQ9H300 379 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 SPANXCQ9NY87 97 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 ZNF492Q9P255 531 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 PSG8Q9UQ74 426 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 MRPS16Q9Y3D3 137 aaKnown RBP5.32□□□□□ -1.56
NUP54-204ENST00000506098 MGAM2Q2M2H8 2515 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 MUC4Q99102 2169 aa5.32□□□□□ -1.56
NUP54-204ENST00000506098 A8MZ25 164 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 C9JCJ5 164 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 LTAP01374 205 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 ZNF705DP0CH99 300 aaPredicted RBP5.31□□□□□ -1.56
NUP54-204ENST00000506098 ZNF705BP0CI00 300 aaPredicted RBP5.31□□□□□ -1.56
NUP54-204ENST00000506098 CT45A10P0DMU9 189 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 ESDP10768 282 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 CRISP2P16562 243 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 ZNF138P52744 262 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 UBE2G1P62253 170 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 ERCC8Q13216 396 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 TMEM78Q5T7P6 136 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 AMTNQ6UX39 209 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 TEX43Q6ZNM6 134 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 TRPT1Q86TN4 253 aaKnown RBP5.31□□□□□ -1.56
NUP54-204ENST00000506098 PTH2Q96A98 100 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 ANAPC16Q96DE5 110 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 DAZAP1Q96EP5 407 aaKnown RBP5.31□□□□□ -1.56
NUP54-204ENST00000506098 IGF2BP2-AS1Q96M15 143 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 DERL1Q9BUN8 251 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 MLST8Q9BVC4 326 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 LY96Q9Y6Y9 160 aa5.31□□□□□ -1.56
NUP54-204ENST00000506098 TRBV20OR9-2A0A075B6H5 130 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 TRBV24-1A0A075B6N3 115 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 TRAV8-1A0A0A6YYK1 113 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 KNCNA6PVL3 124 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 ZNF705GA8MUZ8 300 aaPredicted RBP5.3□□□□□ -1.56
NUP54-204ENST00000506098 IGLV2-8P01709 118 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 TYMSP04818 313 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 HIST1H1AQ02539 215 aaPredicted RBP5.3□□□□□ -1.56
NUP54-204ENST00000506098 SOHLH1Q5JUK2 328 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 ACTL10Q5JWF8 245 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 LINC00322Q6ZN03 302 aaPredicted RBP5.3□□□□□ -1.56
NUP54-204ENST00000506098 Q86TA4 180 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 STHQ8IWL8 128 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 DEFB125Q8N687 156 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 OR4B1Q8NGF8 309 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 TVP23CQ96ET8 276 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 BTF3L4Q96K17 158 aa5.3□□□□□ -1.56
NUP54-204ENST00000506098 PRR25Q96S07 402 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms