RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 EIF4E3Q8N5X7 224 aaKnown RBP7.22□□□□□ -1.25
NUP54-203ENST00000504173 ZC2HC1AQ96GY0 325 aa7.22□□□□□ -1.25
NUP54-203ENST00000504173 C11orf68Q9H3H3 251 aaKnown RBP7.22□□□□□ -1.25
NUP54-203ENST00000504173 TMEM189A5PLL7 270 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 CBY3A6NI87 242 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 SRP19P09132 144 aaKnown RBP7.21□□□□□ -1.26
NUP54-203ENST00000504173 EMP1P54849 157 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 FAM159AQ6UWV7 190 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 COX8CQ7Z4L0 72 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 TMEM263Q8WUH6 116 aaKnown RBP7.21□□□□□ -1.26
NUP54-203ENST00000504173 C16orf74Q96GX8 76 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 LINC00467Q9BRT7 94 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 PARLQ9H300 379 aa7.21□□□□□ -1.26
NUP54-203ENST00000504173 FABP5P3A8MUU1 101 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 MGST1P10620 155 aaKnown RBP7.2□□□□□ -1.26
NUP54-203ENST00000504173 AZU1P20160 251 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 SRSF3P84103 164 aaKnown RBP7.2□□□□□ -1.26
NUP54-203ENST00000504173 FAM162BQ5T6X4 162 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 PRR27Q6MZM9 219 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 ZNF493Q6ZR52 646 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 RNASE8Q8TDE3 154 aaKnown RBP7.2□□□□□ -1.26
NUP54-203ENST00000504173 MLST8Q9BVC4 326 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 SMDT1Q9H4I9 107 aa7.2□□□□□ -1.26
NUP54-203ENST00000504173 TRGV11A0A075B6L2 103 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 C9JCJ5 164 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 SH2D1AO60880 128 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 CRIP1P50238 77 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 ANXA2RQ3ZCQ2 193 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 SMIM12Q96EX1 92 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 KCNS1Q96KK3 526 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 SMIM7Q9BQ49 75 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 SDF2L1Q9HCN8 221 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 TP53TG3Q9ULZ0 132 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 MUC4Q99102 2169 aa7.19□□□□□ -1.26
NUP54-203ENST00000504173 TRBV20OR9-2A0A075B6H5 130 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 CXorf65A6NEN9 183 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 PGPEP1LA6NFU8 196 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 ZNF727A8MUV8 499 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 SNURFLB1AK76 121 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 C9JQL5 133 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 M0R036 132 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 IGLV2-8P01709 118 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 ORM1P02763 201 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 ZNF415Q09FC8 603 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 TDRG1Q3Y452 100 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 LINC00476Q8WZB0 136 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 BIN3Q9NQY0 253 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 C11orf21Q9P2W6 132 aa7.18□□□□□ -1.26
NUP54-203ENST00000504173 TEX48A0A1B0GUV7 120 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 PLAC8L1A1L4L8 177 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 B4DEV8 164 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 GNRH2O43555 120 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 TYMSP04818 313 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 SPART-AS1P0CW21 52 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 TCL1AP56279 114 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 IBA57Q5T440 356 aaKnown RBP7.17□□□□□ -1.26
NUP54-203ENST00000504173 FAM222AQ5U5X8 452 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 IL17DQ8TAD2 202 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 OCC1Q8TAD7 63 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 C11orf45Q8TAV5 145 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 DAZAP1Q96EP5 407 aaKnown RBP7.17□□□□□ -1.26
NUP54-203ENST00000504173 NOP10Q9NPE3 64 aaKnown RBP7.17□□□□□ -1.26
NUP54-203ENST00000504173 GSN-AS1Q9NRJ2 163 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 DKK2Q9UBU2 259 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 CELA1Q9UNI1 258 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 TIMM8BQ9Y5J9 83 aaPredicted RBP7.17□□□□□ -1.26
NUP54-203ENST00000504173 KMT2AQ03164 3969 aa7.17□□□□□ -1.26
NUP54-203ENST00000504173 IGKV3D-20A0A0C4DH25 116 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 IGHV3-16A0A0C4DH30 117 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 LYRM9A8MSI8 78 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 MED14OSP0DP75 135 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 OR5I1Q13606 314 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 LINC01559Q495D7 138 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 FAM74A3Q4VXF1 159 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 SOHLH1Q5JUK2 328 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 C11orf72Q8NBR9 251 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 KRTAP4-5Q9BYR2 181 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 MDFICQ9P1T7 246 aa7.16□□□□□ -1.26
NUP54-203ENST00000504173 PKHD1P08F94 4074 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 TMSB15BA0A087X1C1 80 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 KRBOX1C9JBD0 128 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 K7EN84 100 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 SFTA3P0C7M3 94 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 S100A4P26447 101 aaKnown RBP7.15□□□□□ -1.26
NUP54-203ENST00000504173 ASIPP42127 132 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 NANOS2P60321 138 aaKnown RBP7.15□□□□□ -1.26
NUP54-203ENST00000504173 DAZ2Q13117 558 aaKnown RBP7.15□□□□□ -1.26
NUP54-203ENST00000504173 UQCC3Q6UW78 93 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 COMMD7Q86VX2 200 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 LY96Q9Y6Y9 160 aa7.15□□□□□ -1.26
NUP54-203ENST00000504173 TRGV1A0A0A0MS02 117 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 GRIFINA4D1Z8 144 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 LINC00862A6NCI5 91 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 C19orf71A6NCJ1 209 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 P01737 135 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 DEFB130BP0DP73 79 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 DEFB130AP0DP74 79 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 DAD1P61803 113 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 RPL19P84098 196 aaKnown RBP7.14□□□□□ -1.27
NUP54-203ENST00000504173 TMEM241Q24JQ0 296 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms