RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 KLF5Q13887 457 aaPredicted RBP10.36□□□□□ -0.75
PTPRF-215ENST00000496447 ANKRD39Q53RE8 183 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 TMEM126AQ9H061 195 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 HLA-DRB4X5D2U9 266 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.36□□□□□ -0.753e-7■■■□□ 16.4
PTPRF-215ENST00000496447 PLXNA2O75051 1894 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 C10orf105Q8TEF2 133 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 UTF1Q5T230 341 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 NEGR1Q7Z3B1 354 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 NOP10Q9NPE3 64 aaKnown RBP10.36□□□□□ -0.75
PTPRF-215ENST00000496447 DKK4Q9UBT3 224 aa10.36□□□□□ -0.75
PTPRF-215ENST00000496447 ZFHX2Q9C0A1 2572 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-215ENST00000496447 IGLV3-1P01715 115 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 C11orf53Q8IXP5 236 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 HELZP42694 1942 aaKnown RBP10.35□□□□□ -0.75
PTPRF-215ENST00000496447 A0A0J9YY99 117 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 SPRNQ5BIV9 151 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 C11orf52Q96A22 123 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 CITED2Q99967 270 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-215ENST00000496447 ZNF491Q8N8L2 437 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 SLURP1P55000 103 aa10.35□□□□□ -0.75
PTPRF-215ENST00000496447 CRYBA4P53673 196 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 PRSS57Q6UWY2 283 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 IGFBPL1Q8WX77 278 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 NOTCH3Q9UM47 2321 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 RHOHQ15669 191 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 MRPL51Q4U2R6 128 aaKnown RBP10.34□□□□□ -0.75
PTPRF-215ENST00000496447 MRPL53Q96EL3 112 aaKnown RBP10.34□□□□□ -0.75
PTPRF-215ENST00000496447 NXPH4O95158 308 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 WIPF2Q8TF74 440 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-215ENST00000496447 TRAV26-1A0A087WT03 109 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 GP9P14770 177 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 MUC6Q6W4X9 2439 aa10.34□□□□□ -0.75
PTPRF-215ENST00000496447 F6UB75 175 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 DAZAP2Q15038 168 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-215ENST00000496447 PRSS29PA6NIE9 313 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 TAX1BP3O14907 124 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 C12orf74Q32Q52 190 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 CLPSL2Q6UWE3 100 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 ZC2HC1AQ96GY0 325 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 LHBP01229 141 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 FXYD5Q96DB9 178 aa10.33□□□□□ -0.76
PTPRF-215ENST00000496447 IGKV2D-24A0A075B6R9 120 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 K7ERJ3 54 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 RPL32P62910 135 aaKnown RBP10.32□□□□□ -0.76
PTPRF-215ENST00000496447 PIFOQ8TCI5 191 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 C15orf53Q8NAA6 179 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 ANAPC1Q9H1A4 1944 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 SRSF2Q01130 221 aaKnown RBP10.32□□□□□ -0.76
PTPRF-215ENST00000496447 NOTCH4Q99466 2003 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 IGKV1OR2-108A0A075B7D4 117 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 APRG1Q8IVJ8 170 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 U3KQE9 123 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 BLCAPP62952 87 aa10.32□□□□□ -0.76
PTPRF-215ENST00000496447 NUP210Q8TEM1 1887 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-215ENST00000496447 SIGLEC8Q9NYZ4 499 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 IGLV2-23P01705 113 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 HEATR5AQ86XA9 2040 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 TDRG1Q3Y452 100 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 ZGRF1Q86YA3 2104 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 J3KT08 172 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 HLA-DMBP28068 263 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 PLXND1Q9Y4D7 1925 aa10.31□□□□□ -0.76
PTPRF-215ENST00000496447 AMTNQ6UX39 209 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 DOCK9Q9BZ29 2069 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 GTF3C1Q12789 2109 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 NPBQ8NG41 125 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 PRO1854Q9UHT4 67 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 IGHV7-81A0A0B4J1V7 117 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 SCRT2Q9NQ03 307 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 CREBBPQ92793 2442 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 PCNX2A6NKB5 2137 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 DYNAPQ8N1N2 210 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 C17orf77Q96MU5 243 aa10.3□□□□□ -0.76
PTPRF-215ENST00000496447 IGHG4P01861 327 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 ANKRD29Q8N6D5 301 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 FAM208BQ5VWN6 2430 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 A0A1W2PNU3 283 aaPredicted RBP10.29□□□□□ -0.76
PTPRF-215ENST00000496447 AJUBAQ96IF1 538 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 SMIM2Q9BVW6 85 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 Q9HAA7 133 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 GNRH2O43555 120 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 NUPR1O60356 82 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 MYLKQ15746 1914 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 MALRD1Q5VYJ5 2156 aa10.29□□□□□ -0.76
PTPRF-215ENST00000496447 FGF6P10767 208 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 NPYP01303 97 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 HERVK_113P63121 156 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 RNF138Q8WVD3 245 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 Q6ZQT7 251 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 SH2D6Q7Z4S9 175 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 ZNF747Q9BV97 191 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 AGPAT4-IT1Q9H0P7 198 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 NDUFA12Q9UI09 145 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 RBX1P62877 108 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 Q8NFD4 153 aa10.28□□□□□ -0.76
PTPRF-215ENST00000496447 IGLL5B9A064 214 aa10.27□□□□□ -0.76
PTPRF-215ENST00000496447 PRR20EP86478 221 aa10.27□□□□□ -0.76
PTPRF-215ENST00000496447 PRR20CP86479 221 aa10.27□□□□□ -0.76
PTPRF-215ENST00000496447 PRR20DP86480 221 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms