RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 EP300Q09472 2414 aaPredicted RBP2.42□□□□□ -2.02
CCDC39-207ENST00000495817 PCNX2A6NKB5 2137 aa2.42□□□□□ -2.02
CCDC39-207ENST00000495817 SETXQ7Z333 2677 aaKnown RBP2.42□□□□□ -2.02
CCDC39-207ENST00000495817 SPTBN2O15020 2390 aa2.42□□□□□ -2.02
CCDC39-207ENST00000495817 TANC2Q9HCD6 1990 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 TRAV9-1A0A075B6T8 112 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 NPFFO15130 113 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 CDK6Q00534 326 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 RPP25LQ8N5L8 163 aaKnown RBP2.41□□□□□ -2.02
CCDC39-207ENST00000495817 ACBD7Q8N6N7 88 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 TOMM6Q96B49 74 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 PTPRZ1P23471 2315 aaPredicted RBP2.41□□□□□ -2.02
CCDC39-207ENST00000495817 ANK1P16157 1881 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 DSPPQ9NZW4 1301 aa2.41□□□□□ -2.02
CCDC39-207ENST00000495817 CEP295Q9C0D2 2601 aa2.4□□□□□ -2.02
CCDC39-207ENST00000495817 ASH1LQ9NR48 2969 aaKnown RBP2.4□□□□□ -2.02
CCDC39-207ENST00000495817 ICE1Q9Y2F5 2266 aa2.4□□□□□ -2.02
CCDC39-207ENST00000495817 DMXL2Q8TDJ6 3036 aa2.4□□□□□ -2.02
CCDC39-207ENST00000495817 IGF2RP11717 2491 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 IGLV3-9A0A075B6K5 115 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TRAV30A0A087WSZ9 112 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 A0A0G2JQZ4 141 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 FAM236AA0A1B0GUQ0 79 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 FAM236BA0A1B0GV22 79 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TMEM218A2RU14 115 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 ARRDC5A6NEK1 342 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TLCD2A6NGC4 264 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 C1orf196B1AJZ1 125 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 OR2T1O43869 369 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 SNAPC5O75971 98 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 GPX1P07203 203 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 PAEPP09466 180 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 NFYBP25208 207 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 GNG4P50150 75 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 DIAPH2-AS1Q14236 149 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 BCL2L15Q5TBC7 163 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TMEM244Q5VVB8 128 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 LCA10Q71F78 164 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TEX29Q8N6K0 151 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.4□□□□□ -2.03
CCDC39-207ENST00000495817 OR4X2Q8NGF9 303 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 BRK1Q8WUW1 75 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 H1FXQ92522 213 aaKnown RBP2.4□□□□□ -2.03
CCDC39-207ENST00000495817 IMUPQ9GZP8 106 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 EFCAB1Q9HAE3 211 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 CBLN4Q9NTU7 201 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 LAMTOR3Q9UHA4 124 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 NAT8Q9UHE5 227 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 TPRP12270 2363 aaKnown RBP2.4□□□□□ -2.03
CCDC39-207ENST00000495817 BPTFQ12830 3046 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 GCN1Q92616 2671 aaKnown RBP2.4□□□□□ -2.03
CCDC39-207ENST00000495817 PKD1L2Q7Z442 2459 aa2.4□□□□□ -2.03
CCDC39-207ENST00000495817 IGKV1-9A0A0C4DH69 117 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 A0A0J9YW62 118 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 GGT3PA6NGU5 568 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 ZNF860A6NHJ4 632 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 CCDC179H3BU77 68 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 J3QR89 54 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 M0R378 163 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 TAX1BP3O14907 124 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 LYZL6O75951 148 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 APODP05090 189 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 ZNF705DP0CH99 300 aaPredicted RBP2.39□□□□□ -2.03
CCDC39-207ENST00000495817 HIST1H1BP16401 226 aaKnown RBP2.39□□□□□ -2.03
CCDC39-207ENST00000495817 PSMB8P28062 276 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 ZNF80P51504 273 aaPredicted RBP2.39□□□□□ -2.03
CCDC39-207ENST00000495817 RPL30P62888 115 aaKnown RBP2.39□□□□□ -2.03
CCDC39-207ENST00000495817 RHOGP84095 191 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 MSMO1Q15800 293 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 LYZL1Q6UWQ5 148 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 SSX8Q7RTT4 187 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 TRAPPC6BQ86SZ2 158 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 MMGT1Q8N4V1 131 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 OR2T10Q8NGZ9 312 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 PP6455Q8WZ26 134 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 BANF2Q9H503 90 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 RNF11Q9Y3C5 154 aa2.39□□□□□ -2.03
CCDC39-207ENST00000495817 SOX21Q9Y651 276 aaPredicted RBP2.39□□□□□ -2.03
CCDC39-207ENST00000495817 MPDZO75970 2070 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 DSPP15924 2871 aaKnown RBP2.38□□□□□ -2.03
CCDC39-207ENST00000495817 IGHV3-64A0A075B6Q5 118 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 TRBV7-6A0A0J9YX20 115 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 IFITM5A6NNB3 132 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 BUB1B-PAK6H3BSN5 160 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 TMEM256-PLSCR3K7ERE1 68 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 M0R129 80 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 CXCL1P09341 107 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HLA-EP13747 358 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST1H2BOP23527 126 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST1H2BBP33778 126 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 SDC2P34741 201 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 NDUFA6P56556 154 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST1H2BDP58876 126 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST1H2BCP62807 126 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST2H2BEQ16778 126 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 RRN3P1Q2M238 152 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.38□□□□□ -2.03
CCDC39-207ENST00000495817 C1orf140Q5VVS0 124 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 TENM4Q6N022 2769 aa2.38□□□□□ -2.03
CCDC39-207ENST00000495817 Q6ZTI0 123 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms