RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 UNQ9165/PRO28630Q6UXU0 137 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 ZNF462Q96JM2 2506 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 TRAV8-2A0A0B4J237 113 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 IGKV3D-20A0A0C4DH25 116 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 H3BVH4 76 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 Q6AWC8 147 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 AGPAT4-IT1Q9H0P7 198 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 MOB4Q9Y3A3 225 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 FABP5P3A8MUU1 101 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 K7ERU9 68 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 M0R381 172 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 ATP5J2P56134 94 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 RPL11P62913 178 aaKnown RBP12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 SEC11AP67812 179 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 AMTNQ6UX39 209 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 C8orf86Q6ZUL3 223 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 MRPL35Q9NZE8 188 aaKnown RBP12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 ABCA12Q86UK0 2595 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 MXRA5Q9NR99 2828 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 H3BUX3 64 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 BLCAPP62952 87 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 NEGR1Q7Z3B1 354 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 METTL26Q96S19 204 aa12.63□□□□□ -0.39
CCDC88B-210ENST00000494566 SRD5A1P18405 259 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 MAPKAPK5-AS1Q8N8E1 139 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 PIMREGQ9BSJ6 248 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 BMI1P35226 326 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 EMP1P54849 157 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 HSD52Q0P140 79 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 ODF1Q14990 250 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 GTF2H5Q6ZYL4 71 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 U3KQK5 164 aa12.62□□□□□ -0.39
CCDC88B-210ENST00000494566 IGLC6P0CF74 106 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 SPANXN1Q5VSR9 72 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 OR1N2Q8NGR9 330 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 A0A1B0GW15 77 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 GATD1Q8NB37 220 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 H3BRM9 83 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 SMIM17P0DL12 118 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 SAMD5Q5TGI4 173 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 CHAC1Q9BUX1 264 aa12.61□□□□□ -0.39
CCDC88B-210ENST00000494566 TRBV7-1A0A0A6YYK4 115 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 F6UB75 175 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 ARL3P36405 182 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 C10orf105Q8TEF2 133 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 A0A1W2PPM0 123 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 K7EP34 96 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 AVPP01185 164 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 USP24Q9UPU5 2620 aa12.6□□□□□ -0.39
CCDC88B-210ENST00000494566 IGKCP01834 107 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 TMEM95Q3KNT9 176 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 PRR9Q5T870 116 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 MAPK1IP1LQ8NDC0 245 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 C16orf92Q96LL3 132 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 C20orf173Q96LM9 149 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 HHLA3Q9XRX5 114 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 PTPN13Q12923 2485 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 TRBV25-1A0A075B6N4 114 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 UFSP1Q6NVU6 142 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 CLEC2AQ6UVW9 174 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 SMIM15Q7Z3B0 74 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 COX8CQ7Z4L0 72 aa12.59□□□□□ -0.39
CCDC88B-210ENST00000494566 PPBPP02775 128 aa12.58□□□□□ -0.39
CCDC88B-210ENST00000494566 EDN2P20800 178 aa12.58□□□□□ -0.39
CCDC88B-210ENST00000494566 PSMG3-AS1Q96PY0 264 aa12.58□□□□□ -0.39
CCDC88B-210ENST00000494566 CSTL1Q9H114 145 aa12.58□□□□□ -0.39
CCDC88B-210ENST00000494566 SETD2Q9BYW2 2564 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 MGPP08493 103 aa12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 SMIM13P0DJ93 91 aa12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 PF4V1P10720 104 aa12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 TMEM78Q5T7P6 136 aa12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 FABP2P12104 132 aa12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 RPL39LQ96EH5 51 aaKnown RBP12.58□□□□□ -0.4
CCDC88B-210ENST00000494566 TEX48A0A1B0GUV7 120 aa12.57□□□□□ -0.4
CCDC88B-210ENST00000494566 SLC50A1Q9BRV3 221 aa12.57□□□□□ -0.4
CCDC88B-210ENST00000494566 NACAE9PAV3 2078 aa12.57□□□□□ -0.4
CCDC88B-210ENST00000494566 PRB1P04280 392 aa12.57□□□□□ -0.4
CCDC88B-210ENST00000494566 C19orf54Q5BKX5 351 aa12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 TLN2Q9Y4G6 2542 aa12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 SH2D6Q7Z4S9 175 aa12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 C14orf178Q8N769 122 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 OR9G4Q8NGQ1 327 aa12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 TMEM190Q8WZ59 177 aa12.56□□□□□ -0.4
CCDC88B-210ENST00000494566 RAB9AP51151 201 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 RPS20P60866 119 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 H3BMG7 143 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 WFDC2Q14508 124 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 KLK9Q2XQG4 91 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 OR4X2Q8NGF9 303 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 GTSF1LQ9H1H1 148 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 KLK9Q9UKQ9 250 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 TEX15Q9BXT5 2789 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 DPM2O94777 84 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 GPHB5Q86YW7 130 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 U3KQE9 123 aa12.55□□□□□ -0.4
CCDC88B-210ENST00000494566 ZNF469Q96JG9 3925 aaPredicted RBP12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 TGFAP01135 160 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 LINC01559Q495D7 138 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 MYOZ3Q8TDC0 251 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 HIST1H4GQ99525 98 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms