RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 C5orf47Q569G3 176 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 ZC2HC1AQ96GY0 325 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 TMEM14CQ9P0S9 112 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 IGHV4OR15-8A0A075B7B6 117 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 A0A087WW49 117 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 ASPHD1Q5U4P2 390 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 CYYR1Q96J86 154 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 Q9H8V8 135 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 UTF1Q5T230 341 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 RS1O15537 224 aa10.32□□□□□ -0.76
COL6A3-212ENST00000491769 CFPP27918 469 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 DYNAPQ8N1N2 210 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 AJUBAQ96IF1 538 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 CARD19Q96LW7 228 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 C10orf105Q8TEF2 133 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 MED12Q93074 2177 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 WT1P19544 449 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-212ENST00000491769 C17orf77Q96MU5 243 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 NCOR1P1Q9H4R4 102 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 CTSZQ9UBR2 303 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 IGLC1P0CG04 106 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 KIAA2026Q5HYC2 2103 aa10.31□□□□□ -0.76
COL6A3-212ENST00000491769 J3QQQ9 107 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 MYCNOSP40205 109 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 SEM1Q6ZVN7 128 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 GTSF1Q8WW33 167 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 NPYP01303 97 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 HHLA3Q9XRX5 114 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 NCR3O14931 201 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 ABCA1O95477 2261 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 MRPL35Q9NZE8 188 aaKnown RBP10.3□□□□□ -0.76
COL6A3-212ENST00000491769 KAAG1Q9UBP8 84 aa10.3□□□□□ -0.76
COL6A3-212ENST00000491769 C15orf65H3BRN8 121 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 OR11H6Q8NGC7 330 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 ORMDL1Q9P0S3 153 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 LTBP1Q14766 1721 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 HIST2H2BCQ6DN03 193 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 FAM231BA6NCW3 169 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 ADORA2A-AS1P86434 159 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 BAALCQ8WXS3 180 aa10.29□□□□□ -0.76
COL6A3-212ENST00000491769 ZNF491Q8N8L2 437 aa10.28□□□□□ -0.76
COL6A3-212ENST00000491769 NDUFA1O15239 70 aa10.28□□□□□ -0.76
COL6A3-212ENST00000491769 C18orf32Q8TCD1 76 aa10.27□□□□□ -0.76
COL6A3-212ENST00000491769 COX7B2Q8TF08 81 aa10.27□□□□□ -0.76
COL6A3-212ENST00000491769 TP53BP1Q12888 1972 aaPredicted RBP10.27□□□□□ -0.76
COL6A3-212ENST00000491769 TRBV20-1A0A075B6N2 111 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 ZNF493Q6ZR52 646 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 C11orf45Q8TAV5 145 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 C20orf78Q9BR46 151 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 IGKV2-24A0A0C4DH68 120 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 BVES-AS1Q5T3Y7 98 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 PRO1854Q9UHT4 67 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 COLCA2A8K830 154 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 KLK12Q9UKR0 248 aa10.27□□□□□ -0.77
COL6A3-212ENST00000491769 PHF3Q92576 2039 aaKnown RBP10.27□□□□□ -0.77
COL6A3-212ENST00000491769 AGPAT4-IT1Q9H0P7 198 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 C8orf31Q8N9H6 132 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 WIPF3A6NGB9 483 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 DAZ2Q13117 558 aaKnown RBP10.26□□□□□ -0.77
COL6A3-212ENST00000491769 DAZ4Q86SG3 579 aaKnown RBP10.26□□□□□ -0.77
COL6A3-212ENST00000491769 RNF152Q8N8N0 203 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 DAZ3Q9NR90 486 aaKnown RBP10.26□□□□□ -0.77
COL6A3-212ENST00000491769 FXYD5Q96DB9 178 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 C14orf132Q9NPU4 83 aa10.26□□□□□ -0.77
COL6A3-212ENST00000491769 HERV-K104P63124 156 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 C4orf3Q8WVX3 66 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 B9D2Q9BPU9 175 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 F8VRH5 84 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 PLA2G5P39877 138 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 SPRNQ5BIV9 151 aa10.25□□□□□ -0.77
COL6A3-212ENST00000491769 C2orf70A6NJV1 201 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 WFDC11Q8NEX6 87 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 KIAA1671Q9BY89 1806 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 IGHV7-81A0A0B4J1V7 117 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 DNAJC9-AS1A6NH13 148 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 PROP1O75360 226 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 WFDC9Q8NEX5 89 aa10.24□□□□□ -0.77
COL6A3-212ENST00000491769 INAFM1C9JVW0 142 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 H0Y9J4 135 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 LTAP01374 205 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 VSIG2Q96IQ7 327 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 DEFB125Q8N687 156 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 SIPA1L1O43166 1804 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 BAALC-AS2P0C853 105 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 SPANXA1Q9NS26 97 aa10.23□□□□□ -0.77
COL6A3-212ENST00000491769 CRYBA4P53673 196 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 CEND1Q8N111 149 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 THSD7BQ9C0I4 1608 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 A8MWP6 167 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 C5orf56Q8N8D9 126 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 SMIM27A0A1W2PRY6 76 aa10.22□□□□□ -0.77
COL6A3-212ENST00000491769 RPL39LQ96EH5 51 aaKnown RBP10.22□□□□□ -0.77
COL6A3-212ENST00000491769 IGLC7A0M8Q6 106 aa10.21□□□□□ -0.77
COL6A3-212ENST00000491769 RBM3P98179 157 aaKnown RBP10.21□□□□□ -0.77
COL6A3-212ENST00000491769 Q0VG73 95 aa10.21□□□□□ -0.77
COL6A3-212ENST00000491769 DOCK8Q8NF50 2099 aa10.21□□□□□ -0.77
COL6A3-212ENST00000491769 NCOR1O75376 2440 aa10.21□□□□□ -0.77
COL6A3-212ENST00000491769 SEC61GP60059 68 aa10.21□□□□□ -0.77
COL6A3-212ENST00000491769 RBAKDNA6NC62 111 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 PRR20EP86478 221 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms