RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PGPA6NDG6 321 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 F6UZH7 168 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 GATA1P15976 413 aaPredicted RBP8.32□□□□□ -1.08
CPSF3-204ENST00000489403 TAS2R45P59539 299 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 TVP23CQ96ET8 276 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 OTORQ9NRC9 128 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 NDUFA13Q9P0J0 144 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 HSPB11Q9Y547 144 aa8.32□□□□□ -1.08
CPSF3-204ENST00000489403 IGLV5-52A0A0A0MRZ9 124 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 TRAV21A0A0B4J279 112 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 PSCAO43653 123 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 PPT1P50897 306 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 H2BFSP57053 126 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 TIRAPP58753 221 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 CYCSP99999 105 aaKnown RBP8.31□□□□□ -1.08
CPSF3-204ENST00000489403 LINC01556Q5JQF7 62 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 GOLT1AQ6ZVE7 132 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 SH2D6Q7Z4S9 175 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 NHLRC2Q8NBF2 726 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 CMTM2Q8TAZ6 248 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 ENKURQ8TC29 256 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 PPP1R1CQ8WVI7 109 aa8.31□□□□□ -1.08
CPSF3-204ENST00000489403 DNAH8Q96JB1 4490 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 TRAV8-1A0A0A6YYK1 113 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 FAM74A1Q5RGS3 127 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 NTN5Q8WTR8 489 aaPredicted RBP8.3□□□□□ -1.08
CPSF3-204ENST00000489403 TMEM70Q9BUB7 260 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 SMIM3Q9BZL3 60 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 SDF2L1Q9HCN8 221 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 MBD2Q9UBB5 411 aa8.3□□□□□ -1.08
CPSF3-204ENST00000489403 IBA57-AS1B1ANH7 110 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 FAM229AH3BQW9 127 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 MPC2O95563 127 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 GNG5P63218 68 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 LINC00299Q6ZSB3 139 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 ARL6IP6Q8N6S5 226 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 Q8N814 137 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 SLC25A29Q8N8R3 303 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 SCGB1C1Q8TD33 95 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 TREM1Q9NP99 234 aa8.29□□□□□ -1.08
CPSF3-204ENST00000489403 FBLL1A6NHQ2 334 aaKnown RBP8.28□□□□□ -1.08
CPSF3-204ENST00000489403 UPK1BO75841 260 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 PET100P0DJ07 73 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 RPL12P30050 165 aaKnown RBP8.28□□□□□ -1.08
CPSF3-204ENST00000489403 IFITM3Q01628 133 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 DPPA3Q6W0C5 159 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 PQLC2Q6ZP29 291 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 Q6ZSN1 163 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 S100ZQ8WXG8 99 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 ASB13Q8WXK3 278 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 KCNS1Q96KK3 526 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 Q9HAA7 133 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 WFDC1Q9HC57 220 aa8.28□□□□□ -1.08
CPSF3-204ENST00000489403 DMBT1Q9UGM3 2413 aaPredicted RBP8.27□□□□□ -1.09
CPSF3-204ENST00000489403 IGHV3-73A0A0B4J1V6 119 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 TRAV8-6A0A0B4J262 113 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 A0A1W2PPV4 95 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 INMT-MINDY4F8WBC2 141 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 HMGB3O15347 200 aaKnown RBP8.27□□□□□ -1.09
CPSF3-204ENST00000489403 RS1O15537 224 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 IGHV3-30P01768 117 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 IGHV3-33P01772 117 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 PFN1P07737 140 aaKnown RBP8.27□□□□□ -1.09
CPSF3-204ENST00000489403 IGHV3-30-3P0DP02 117 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 IGHV3-30-5P0DP03 117 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 ZNF80P51504 273 aaPredicted RBP8.27□□□□□ -1.09
CPSF3-204ENST00000489403 RAB2AP61019 212 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 RHOHQ15669 191 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 ACOT6Q3I5F7 207 aaPredicted RBP8.27□□□□□ -1.09
CPSF3-204ENST00000489403 ZNF876PQ49A33 203 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 OR10J3Q5JRS4 329 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 CFAP126Q5VTH2 177 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 SGK494Q96LW2 274 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 PRADC1Q9BSG0 188 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 FAM30AQ9NZY2 134 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 C11orf21Q9P2W6 132 aa8.27□□□□□ -1.09
CPSF3-204ENST00000489403 TRBV6-4A0A1B0GX49 114 aa8.26□□□□□ -1.09
CPSF3-204ENST00000489403 LELP1Q5T871 98 aa8.26□□□□□ -1.09
CPSF3-204ENST00000489403 FLG2Q5D862 2391 aaPredicted RBP8.25□□□□□ -1.09
CPSF3-204ENST00000489403 PGPEP1LA6NFU8 196 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 CIDEAO60543 219 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 WFDC2Q14508 124 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 TMEM75Q8N9X5 138 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 C9orf85Q96MD7 179 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 MARVELD1Q9BSK0 173 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 NDFIP1Q9BT67 221 aa8.25□□□□□ -1.09
CPSF3-204ENST00000489403 SERTM2A0A1B0GWG4 89 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 SSNA1O43805 119 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 ARL14EPLP0DKL9 152 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 SMCPP49901 116 aaPredicted RBP8.24□□□□□ -1.09
CPSF3-204ENST00000489403 LAGE3Q14657 143 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 ZNF506Q5JVG8 444 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 OR10G9Q8NGN4 311 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 OR10G7Q8NGN6 311 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 ATP6V0E2Q8NHE4 81 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 GTSF1LQ9H1H1 148 aa8.24□□□□□ -1.09
CPSF3-204ENST00000489403 SRRM2Q9UQ35 2752 aaKnown RBP8.23□□□□□ -1.09
CPSF3-204ENST00000489403 GCGP01275 180 aa8.23□□□□□ -1.09
CPSF3-204ENST00000489403 TCRAP04437 139 aa8.23□□□□□ -1.09
CPSF3-204ENST00000489403 STAG3L2P0CL84 134 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms