RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	ERBIN	Q96RT1	1412 aa		0.37	□□□□□ -2.35
PTPN4-212	ENST00000488896	KIAA1107	Q9UPP5	1409 aa		0.37	□□□□□ -2.35
PTPN4-212	ENST00000488896	PBRM1	Q86U86	1689 aa		0.37	□□□□□ -2.35
PTPN4-212	ENST00000488896	MYH1	P12882	1939 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	PHRF1	Q9P1Y6	1649 aa	Known RBP	0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	FER1L6	Q2WGJ9	1857 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	BORCS7-ASMT	A0A0B4J1R7	106 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	PNMA8C	A0A1B0GUJ8	204 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	OR2H2	O95918	312 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	DBI	P07108	87 aa	Known RBP	0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	NBEAP1	P0C6P0	100 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	CCL4	P13236	92 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	ADCYAP1	P18509	176 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	CKS1B	P61024	79 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	NCS1	P62166	190 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	PLGLB1	Q02325	96 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	CCSMST1	Q4G0I0	132 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	SLC25A26	Q70HW3	274 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	SNX29P2	Q8IUI4	249 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	ATOH7	Q8N100	152 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	C5orf56	Q8N8D9	126 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	PYDC1	Q8WXC3	89 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	SMIM3	Q9BZL3	60 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	SPANXA1	Q9NS26	97 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	MRPL35	Q9NZE8	188 aa	Known RBP	0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	LOC285556	D6RIA3	1793 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	FAM135B	Q49AJ0	1406 aa		0.36	□□□□□ -2.35
PTPN4-212	ENST00000488896	ANK1	P16157	1881 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	ANKRD31	Q8N7Z5	1873 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	MED23	Q9ULK4	1368 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	HELZ	P42694	1942 aa	Known RBP	0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896		J3QR89	54 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896		K7ERU9	68 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896		M0R2Z0	102 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	IGF2	P01344	180 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	RBP4	P02753	201 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	HLA-DRB4	P13762	266 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	SPINK13	Q1W4C9	94 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	TMEM91	Q6ZNR0	172 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	TSKU	Q8WUA8	353 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	DMAC1	Q96GE9	116 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	TMEM141	Q96I45	108 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	SLC35B3	Q9H1N7	401 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	SPANXC	Q9NY87	97 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	COA4	Q9NYJ1	87 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	METTL1	Q9UBP6	276 aa	Known RBP	0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	NOP16	Q9Y3C1	178 aa	Known RBP	0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	DNAJC15	Q9Y5T4	150 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	HLA-DRB4	X5D2U9	266 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	OVOS2	A0A0G2JMS6	1433 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	NCAPD3	P42695	1498 aa		0.35	□□□□□ -2.35
PTPN4-212	ENST00000488896	SPAG17	Q6Q759	2223 aa		0.34	□□□□□ -2.35
PTPN4-212	ENST00000488896	ZNF670-ZNF695	F2Z2N8	137 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896		K7EIL1	84 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896		M0R129	80 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	SLC25A6	P12236	298 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	AKR1D1	P51857	326 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	FRMPD1	Q5SYB0	1578 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	MMGT1	Q8N4V1	131 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	OR4S1	Q8NGB4	309 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	MAFIP	Q8WZ33	124 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	MAGOHB	Q96A72	148 aa	Known RBP	0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	VPS25	Q9BRG1	176 aa		0.34	□□□□□ -2.36
PTPN4-212	ENST00000488896	ANKRD30A	Q9BXX3	1397 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRBV10-1	A0A0K0K1A3	114 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	NBDY	A0A0U1RRE5	68 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896		A0A1B0GX51	115 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	TCRBV3S1	A0A5B6	114 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896		A6NIN4	97 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896		A6NN06	94 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	ARPC5	O15511	151 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	SCT	P09683	121 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	HIST1H1A	Q02539	215 aa	Predicted RBP	0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	ESPL1	Q14674	2120 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896		Q5XG85	94 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	RPL7L1	Q6DKI1	246 aa	Known RBP	0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	TSTD1	Q8NFU3	115 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	DYNLRB2	Q8TF09	96 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	FAM103A1	Q9BTL3	118 aa	Known RBP	0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	C10orf95	Q9H7T3	257 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	TMEM14B	Q9NUH8	114 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	TAS2R8	Q9NYW2	309 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	GSKIP	Q9P0R6	139 aa		0.33	□□□□□ -2.36
PTPN4-212	ENST00000488896	ZNF462	Q96JM2	2506 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896		F2Z2F3	143 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	SCGB1A1	P11684	91 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	ASB16-AS1	Q495Z4	193 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	CTAGE3P	Q8IX95	158 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	PPP1R1C	Q8WVI7	109 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	IFI27L1	Q96BM0	104 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	DSCR8	Q96T75	97 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	PSMG3	Q9BT73	122 aa	Predicted RBP	0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	BET1L	Q9NYM9	111 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	TCOF1	Q13428	1488 aa	Known RBP	0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	PIK3C2A	O00443	1686 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	DOCK11	Q5JSL3	2073 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	ABCA1	O95477	2261 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	NISCH	Q9Y2I1	1504 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	APC	P25054	2843 aa		0.32	□□□□□ -2.36
PTPN4-212	ENST00000488896	USP24	Q9UPU5	2620 aa		0.32	□□□□□ -2.36

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms