RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 MRPL23Q16540 153 aaKnown RBP12.18□□□□□ -0.46
COL9A3-212ENST00000481800 ZFP69Q49AA0 526 aa12.18□□□□□ -0.46
COL9A3-212ENST00000481800 CYB561D1Q8N8Q1 229 aa12.18□□□□□ -0.46
COL9A3-212ENST00000481800 HECTD4Q9Y4D8 3996 aa12.18□□□□□ -0.46
COL9A3-212ENST00000481800 A0A1W2PRE2 83 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 FBLL1A6NHQ2 334 aaKnown RBP12.17□□□□□ -0.46
COL9A3-212ENST00000481800 IFNA7P01567 189 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 TYMSP04818 313 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 SFTA3P0C7M3 94 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 FLI1Q01543 452 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-212ENST00000481800 PRNTQ86SH4 94 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 ZNF479Q96JC4 524 aa12.17□□□□□ -0.46
COL9A3-212ENST00000481800 FAT2Q9NYQ8 4349 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 A0A1W2PPQ1 181 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 GCGP01275 180 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 TNP2Q05952 138 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 ZNF726P1Q15940 193 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 SMUG1Q53HV7 270 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 TMEM75Q8N9X5 138 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 OR4C5Q8NGB2 326 aa12.16□□□□□ -0.46
COL9A3-212ENST00000481800 PCNPQ8WW12 178 aaKnown RBP12.16□□□□□ -0.46
COL9A3-212ENST00000481800 TRAV4A0A0B4J268 109 aa12.15□□□□□ -0.46
COL9A3-212ENST00000481800 G3V3Q6 166 aa12.15□□□□□ -0.46
COL9A3-212ENST00000481800 SAPCD1Q5SSQ6 148 aa12.15□□□□□ -0.46
COL9A3-212ENST00000481800 DNAH17Q9UFH2 4485 aa12.15□□□□□ -0.46
COL9A3-212ENST00000481800 SIVA1O15304 175 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 IGLV2-11P01706 119 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 ORM1P02763 201 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 PFN1P07737 140 aaKnown RBP12.14□□□□□ -0.47
COL9A3-212ENST00000481800 SRIP30626 198 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 PPT1P50897 306 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 ZNF80P51504 273 aaPredicted RBP12.14□□□□□ -0.47
COL9A3-212ENST00000481800 FGF8P55075 233 aaPredicted RBP12.14□□□□□ -0.47
COL9A3-212ENST00000481800 UBE2G2P60604 165 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 NEGR1Q7Z3B1 354 aa12.14□□□□□ -0.47
COL9A3-212ENST00000481800 SMLR1H3BR10 107 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 NXPH4O95158 308 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 MED14OSP0DP75 135 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 LYPD5Q6UWN5 251 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 KRTAP1-5Q9BYS1 174 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 NKX6-2Q9C056 277 aaPredicted RBP12.13□□□□□ -0.47
COL9A3-212ENST00000481800 CYTL1Q9NRR1 136 aa12.13□□□□□ -0.47
COL9A3-212ENST00000481800 TRAV34A0A0B4J273 112 aa12.12□□□□□ -0.47
COL9A3-212ENST00000481800 C9JCJ5 164 aa12.12□□□□□ -0.47
COL9A3-212ENST00000481800 GYPEP15421 78 aa12.12□□□□□ -0.47
COL9A3-212ENST00000481800 BTF3P20290 206 aaKnown RBP12.12□□□□□ -0.47
COL9A3-212ENST00000481800 STOML3Q8TAV4 291 aa12.12□□□□□ -0.47
COL9A3-212ENST00000481800 LINC00479Q96M42 142 aa12.12□□□□□ -0.47
COL9A3-212ENST00000481800 MAP1LC3B2A6NCE7 125 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 K7EQD1 137 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 PEX7O00628 323 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 ZNF876PQ49A33 203 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 TXNDC17Q9BRA2 123 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 MAP1LC3BQ9GZQ8 125 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 C11orf21Q9P2W6 132 aa12.11□□□□□ -0.47
COL9A3-212ENST00000481800 FAM74A7A6NL05 159 aa12.1□□□□□ -0.47
COL9A3-212ENST00000481800 ZNF575Q86XF7 245 aa12.1□□□□□ -0.47
COL9A3-212ENST00000481800 KCNRGQ8N5I3 272 aa12.1□□□□□ -0.47
COL9A3-212ENST00000481800 HIST1H2BAQ96A08 127 aa12.1□□□□□ -0.47
COL9A3-212ENST00000481800 ARL2-SNX15V9GYD0 113 aa12.1□□□□□ -0.47
COL9A3-212ENST00000481800 ZNF345Q14585 488 aa12.09□□□□□ -0.47
COL9A3-212ENST00000481800 MUC4Q99102 2169 aa12.09□□□□□ -0.47
COL9A3-212ENST00000481800 HERC2O95714 4834 aa12.08□□□□□ -0.48
COL9A3-212ENST00000481800 TRAV9-2A0A087WT02 112 aa12.08□□□□□ -0.48
COL9A3-212ENST00000481800 FABP5P3A8MUU1 101 aa12.08□□□□□ -0.48
COL9A3-212ENST00000481800 CIDEAO60543 219 aa12.08□□□□□ -0.48
COL9A3-212ENST00000481800 S100A4P26447 101 aaKnown RBP12.08□□□□□ -0.48
COL9A3-212ENST00000481800 SH2D6Q7Z4S9 175 aa12.08□□□□□ -0.48
COL9A3-212ENST00000481800 A0A0D9SG52 128 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 HMSDA8MTL9 139 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 C16orf90A8MZG2 172 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 GATA1P15976 413 aaPredicted RBP12.07□□□□□ -0.48
COL9A3-212ENST00000481800 LINC00315P59091 139 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 KIAA1109Q2LD37 5005 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 CST9LP1Q5W188 147 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 Q86TA4 180 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 NHLRC2Q8NBF2 726 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 C9orf85Q96MD7 179 aa12.07□□□□□ -0.48
COL9A3-212ENST00000481800 KANTRA0A1W2PQU2 76 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 RS1O15537 224 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 SEC11BP0C7V7 166 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 UBE2G1P62253 170 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 CFAP126Q5VTH2 177 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 PTH2Q96A98 100 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 PRADC1Q9BSG0 188 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 ZNF471Q9BX82 626 aaPredicted RBP12.06□□□□□ -0.48
COL9A3-212ENST00000481800 ZFP30Q9Y2G7 519 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 LY96Q9Y6Y9 160 aa12.06□□□□□ -0.48
COL9A3-212ENST00000481800 IGHV3-73A0A0B4J1V6 119 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 LOC100131303A0A0U1RQF7 123 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 PGPEP1LA6NFU8 196 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 UMAD1C9J7I0 102 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 RNASE3P12724 160 aaKnown RBP12.05□□□□□ -0.48
COL9A3-212ENST00000481800 ASIPP42127 132 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 FHITP49789 147 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 ZNF506Q5JVG8 444 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 OR11H4Q8NGC9 324 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 FAM213BQ8TBF2 198 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 FMC1Q96HJ9 113 aa12.05□□□□□ -0.48
COL9A3-212ENST00000481800 TCEAL7Q9BRU2 100 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms