RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 SUN5Q8TC36 379 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 C8orf49Q96NF6 230 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 AQP10Q96PS8 301 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 WFDC1Q9HC57 220 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 SDF2L1Q9HCN8 221 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 TREM1Q9NP99 234 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 LY96Q9Y6Y9 160 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 DNAH5Q8TE73 4624 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 IGHV3-16A0A0C4DH30 117 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 ARL14EPLP0DKL9 152 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 ERVFC1-1P60608 527 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 ZNF479Q96JC4 524 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 RPH3ALQ9UNE2 315 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 ALG5Q9Y673 324 aa8.29□□□□□ -1.08
SQSTM1-207ENST00000481335 SFTA3P0C7M3 94 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 GYPEP15421 78 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 TIRAPP58753 221 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 C10orf126Q8N4M7 172 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 MAPKAPK5-AS1Q8N8E1 139 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 OR4C5Q8NGB2 326 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 TMEM167BQ9NRX6 74 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 PGPEP1Q9NXJ5 209 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 NAGKQ9UJ70 344 aa8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 APOBP04114 4563 aaKnown RBP8.28□□□□□ -1.08
SQSTM1-207ENST00000481335 TCRAP04437 139 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 TYMSP04818 313 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 DNAH10OSP0CZ25 163 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 EVI2AP22794 236 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 ZFP69Q49AA0 526 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 RAB24Q969Q5 203 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 MED28Q9H204 178 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 TNFSF18Q9UNG2 199 aa8.27□□□□□ -1.09
SQSTM1-207ENST00000481335 TRAV8-1A0A0A6YYK1 113 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 F6UZH7 168 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 TAAR5O14804 337 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 CXorf1O96002 111 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 ATP6V0CP27449 155 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 GCHFRP30047 84 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 KRTAP10-2P60368 255 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 Q8N1X5 172 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 TMEM75Q8N9X5 138 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 HSD17B11Q8NBQ5 300 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 PTH2Q96A98 100 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 TVP23CQ96ET8 276 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 ABCA13Q86UQ4 5058 aa8.26□□□□□ -1.09
SQSTM1-207ENST00000481335 GNRH2O43555 120 aa8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 EIF3GO75821 320 aaKnown RBP eCLIP8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 PFN1P07737 140 aaKnown RBP8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 GIPP09681 153 aaPredicted RBP8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 GATA1P15976 413 aaPredicted RBP8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 GNG5P63218 68 aa8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 SAPCD1Q5SSQ6 148 aa8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 CYB561D1Q8N8Q1 229 aa8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 ACTR3CQ9C0K3 210 aaPredicted RBP8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 MSRB1Q9NZV6 116 aa8.25□□□□□ -1.09
SQSTM1-207ENST00000481335 TRBV6-4A0A1B0GX49 114 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 A0A1W2PRE2 83 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 HMGB3O15347 200 aaKnown RBP8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 FLI1Q01543 452 aaPredicted RBP8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 RHOHQ15669 191 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 ZNF876PQ49A33 203 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 SMUG1Q53HV7 270 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 PIK3CD-AS1Q5SR53 167 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 WFDC10BQ8IUB3 73 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 INO80EQ8NBZ0 244 aaPredicted RBP8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 KRTAP4-5Q9BYR2 181 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 NKX6-2Q9C056 277 aaPredicted RBP8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 PSG8Q9UQ74 426 aa8.24□□□□□ -1.09
SQSTM1-207ENST00000481335 BORCS7-ASMTA0A0B4J1R7 106 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 GGTLC3B5MD39 225 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 GCGP01275 180 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 SUMO1P63165 101 aaKnown RBP8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 C9orf85Q96MD7 179 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 PRADC1Q9BSG0 188 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 SH3BGRL3Q9H299 93 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 EPDR1Q9UM22 224 aa8.23□□□□□ -1.09
SQSTM1-207ENST00000481335 A0A087WTM6 91 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 IGHV3-38A0A0C4DH36 116 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 RS1O15537 224 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 IGLV2-11P01706 119 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 CRYGDP07320 174 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 MGST1P10620 155 aaKnown RBP8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 PPT1P50897 306 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 LINC01556Q5JQF7 62 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 CFAP126Q5VTH2 177 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 NHLRC2Q8NBF2 726 aa8.22□□□□□ -1.09
SQSTM1-207ENST00000481335 TRAV8-6A0A0B4J262 113 aa8.21□□□□□ -1.1
SQSTM1-207ENST00000481335 CTXND1A0A1B0GTU2 59 aa8.21□□□□□ -1.1
SQSTM1-207ENST00000481335 RNF222A6NCQ9 220 aa8.21□□□□□ -1.1
SQSTM1-207ENST00000481335 ZNF80P51504 273 aaPredicted RBP8.21□□□□□ -1.1
SQSTM1-207ENST00000481335 SLC25A29Q8N8R3 303 aa8.21□□□□□ -1.1
SQSTM1-207ENST00000481335 ZNF506Q5JVG8 444 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 ZFP2Q6ZN57 461 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 PRNTQ86SH4 94 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 HIST1H2BAQ96A08 127 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 SGK494Q96LW2 274 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 TCEAL7Q9BRU2 100 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 SCRT2Q9NQ03 307 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 C11orf21Q9P2W6 132 aa8.2□□□□□ -1.1
SQSTM1-207ENST00000481335 LOC100131303A0A0U1RQF7 123 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms