RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 C8orf49Q96NF6 230 aa8.3□□□□□ -1.08
SYNE1-223ENST00000476519 NAGKQ9UJ70 344 aa8.3□□□□□ -1.08
SYNE1-223ENST00000476519 EPDR1Q9UM22 224 aa8.3□□□□□ -1.08
SYNE1-223ENST00000476519 RYR1P21817 5038 aa8.3□□□□□ -1.08
SYNE1-223ENST00000476519 A0A1W2PRE2 83 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 RNF222A6NCQ9 220 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 TAAR5O14804 337 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 ORM1P02763 201 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 GNG5P63218 68 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 SAPCD1Q5SSQ6 148 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 RPL7L1Q6DKI1 246 aaKnown RBP8.29□□□□□ -1.08
SYNE1-223ENST00000476519 LYPD5Q6UWN5 251 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 NEGR1Q7Z3B1 354 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 ZNF479Q96JC4 524 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 SH3BGRL3Q9H299 93 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 SDF2L1Q9HCN8 221 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 PSG8Q9UQ74 426 aa8.29□□□□□ -1.08
SYNE1-223ENST00000476519 DNAH5Q8TE73 4624 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 FXYD6-FXYD2A0A087WZ82 144 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 TRAV4A0A0B4J268 109 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 SIVA1O15304 175 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 OR4C5Q8NGB2 326 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 KRTAP1-5Q9BYS1 174 aa8.28□□□□□ -1.08
SYNE1-223ENST00000476519 NKX6-2Q9C056 277 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-223ENST00000476519 F6UZH7 168 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 K7EP13 123 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 CIDEAO60543 219 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 NXPH4O95158 308 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 IGLV2-11P01706 119 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 TYMSP04818 313 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 PFN1P07737 140 aaKnown RBP8.27□□□□□ -1.09
SYNE1-223ENST00000476519 SFTA3P0C7M3 94 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 FLI1Q01543 452 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-223ENST00000476519 CYB561D1Q8N8Q1 229 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 PCNPQ8WW12 178 aaKnown RBP8.27□□□□□ -1.09
SYNE1-223ENST00000476519 SGK494Q96LW2 274 aa8.27□□□□□ -1.09
SYNE1-223ENST00000476519 TRAV9-2A0A087WT02 112 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 CTXND1A0A1B0GTU2 59 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 GGTLC3B5MD39 225 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 C9JCJ5 164 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 K7EQD1 137 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 GCGP01275 180 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 SRIP30626 198 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 SMUG1Q53HV7 270 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 SH2D6Q7Z4S9 175 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 ZNF575Q86XF7 245 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 TMEM75Q8N9X5 138 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 PTH2Q96A98 100 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 TXNDC17Q9BRA2 123 aa8.26□□□□□ -1.09
SYNE1-223ENST00000476519 PCLOQ9Y6V0 5065 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 HSPG2P98160 4391 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 C16orf90A8MZG2 172 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 GYPEP15421 78 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 PPT1P50897 306 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 ZNF80P51504 273 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-223ENST00000476519 ZFP69Q49AA0 526 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 AKR1C8PQ5T2L2 129 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 PRNTQ86SH4 94 aa8.25□□□□□ -1.09
SYNE1-223ENST00000476519 G3V3Q6 166 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 IFNA7P01567 189 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 ZNF726P1Q15940 193 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 ZNF876PQ49A33 203 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 HIST1H2BAQ96A08 127 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 KRTAP17-1Q9BYP8 105 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 CYTL1Q9NRR1 136 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 C11orf21Q9P2W6 132 aa8.24□□□□□ -1.09
SYNE1-223ENST00000476519 FABP5P3A8MUU1 101 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 ARPC5O15511 151 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 GATA1P15976 413 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-223ENST00000476519 TIRAPP58753 221 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 LINC00315P59091 139 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 NFE4Q86UQ8 179 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 LINC00479Q96M42 142 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 C9orf85Q96MD7 179 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 BOLA1Q9Y3E2 137 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 LY96Q9Y6Y9 160 aa8.23□□□□□ -1.09
SYNE1-223ENST00000476519 FAM74A7A6NL05 159 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 RS1O15537 224 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 CDK2AP2O75956 126 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 EVI2AP22794 236 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 PIK3CD-AS1Q5SR53 167 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 CFAP126Q5VTH2 177 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 Q6ZRN7 208 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-223ENST00000476519 SPATA12Q7Z6I5 190 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 STOML3Q8TAV4 291 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 TCEAL7Q9BRU2 100 aa8.22□□□□□ -1.09
SYNE1-223ENST00000476519 APOBP04114 4563 aaKnown RBP8.21□□□□□ -1.09
SYNE1-223ENST00000476519 TRAV34A0A0B4J273 112 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 TRBV6-4A0A1B0GX49 114 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 PEX7O00628 323 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 DNAH10OSP0CZ25 163 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 FHITP49789 147 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 UBE2G2P60604 165 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 ZNF345Q14585 488 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 COX8CQ7Z4L0 72 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 PRADC1Q9BSG0 188 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 ZFP30Q9Y2G7 519 aa8.21□□□□□ -1.1
SYNE1-223ENST00000476519 IGKV3D-20A0A0C4DH25 116 aa8.2□□□□□ -1.1
SYNE1-223ENST00000476519 MAP1LC3B2A6NCE7 125 aa8.2□□□□□ -1.1
SYNE1-223ENST00000476519 HMSDA8MTL9 139 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms