RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 METTL1Q9UBP6 276 aaKnown RBP0.94□□□□□ -2.26
VPS50-212ENST00000476413 PTPRGP23470 1445 aa0.94□□□□□ -2.26
VPS50-212ENST00000476413 LRP5O75197 1615 aa0.93□□□□□ -2.26
VPS50-212ENST00000476413 KDM5CP41229 1560 aa0.93□□□□□ -2.26
VPS50-212ENST00000476413 CD3DP04234 171 aa0.93□□□□□ -2.26
VPS50-212ENST00000476413 FXYD3Q14802 87 aa0.93□□□□□ -2.26
VPS50-212ENST00000476413 C10orf99Q6UWK7 81 aa0.93□□□□□ -2.26
VPS50-212ENST00000476413 LOC101927531A0A1B0GV80 90 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 GLYATL3Q5SZD4 288 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 TMEM91Q6ZNR0 172 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 IDO2Q6ZQW0 420 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 OR4S1Q8NGB4 309 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 DNAJC15Q9Y5T4 150 aa0.92□□□□□ -2.26
VPS50-212ENST00000476413 IL7P13232 177 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 HIST1H1BP16401 226 aaKnown RBP0.91□□□□□ -2.26
VPS50-212ENST00000476413 EVI2AP22794 236 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 CMPK1P30085 196 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 ZNF137PP52743 207 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 SPATA8Q6RVD6 105 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 TCTE3Q8IZS6 198 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 C5orf56Q8N8D9 126 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 PYDC1Q8WXC3 89 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 TENM3Q9P273 2699 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 AHNAK2Q8IVF2 5795 aa0.91□□□□□ -2.26
VPS50-212ENST00000476413 BCORL1Q5H9F3 1711 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 AFDNP55196 1824 aaKnown RBP0.9□□□□□ -2.27
VPS50-212ENST00000476413 A0A0G2JMM0 328 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 PNMA8CA0A1B0GUJ8 204 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 TPST1O60507 370 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 ADCYAP1P18509 176 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 SPANXA1Q9NS26 97 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 CALML5Q9NZT1 146 aa0.9□□□□□ -2.27
VPS50-212ENST00000476413 LOC285556D6RIA3 1793 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 HIGD1CA8MV81 97 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 OR2H2O95918 312 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 SCGB1A1P11684 91 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 CCDC153Q494R4 210 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 DMAC1Q96GE9 116 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 BANF2Q9H503 90 aa0.89□□□□□ -2.27
VPS50-212ENST00000476413 BORCS7-ASMTA0A0B4J1R7 106 aa0.88□□□□□ -2.27
VPS50-212ENST00000476413 LY6G6CO95867 125 aa0.88□□□□□ -2.27
VPS50-212ENST00000476413 C6orf52Q5T4I8 152 aa0.88□□□□□ -2.27
VPS50-212ENST00000476413 SPANXCQ9NY87 97 aa0.88□□□□□ -2.27
VPS50-212ENST00000476413 HLA-DRB4P13762 266 aa0.87□□□□□ -2.27
VPS50-212ENST00000476413 AKR1D1P51857 326 aa0.87□□□□□ -2.27
VPS50-212ENST00000476413 HLA-DRB4X5D2U9 266 aa0.87□□□□□ -2.27
VPS50-212ENST00000476413 ZCCHC6Q5VYS8 1495 aaKnown RBP0.86□□□□□ -2.27
VPS50-212ENST00000476413 PLXNA2O75051 1894 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 DLEC1Q9Y238 1755 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 PLGLB1Q02325 96 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 ZNF56Q15929 161 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 IQCJQ1A5X6 159 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 MORN2Q502X0 79 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 AIF1LQ9BQI0 150 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 SLC35B3Q9H1N7 401 aa0.86□□□□□ -2.27
VPS50-212ENST00000476413 CPDO75976 1380 aa0.85□□□□□ -2.27
VPS50-212ENST00000476413 RREB1Q92766 1687 aa0.85□□□□□ -2.27
VPS50-212ENST00000476413 KDELR1P24390 212 aa0.85□□□□□ -2.27
VPS50-212ENST00000476413 FAM103A1Q9BTL3 118 aaKnown RBP0.85□□□□□ -2.27
VPS50-212ENST00000476413 ATG5Q9H1Y0 275 aa0.85□□□□□ -2.27
VPS50-212ENST00000476413 CASZ1Q86V15 1759 aa0.85□□□□□ -2.27
VPS50-212ENST00000476413 SMIM24O75264 130 aa0.84□□□□□ -2.27
VPS50-212ENST00000476413 DBIP07108 87 aaKnown RBP0.84□□□□□ -2.27
VPS50-212ENST00000476413 CDK12Q9NYV4 1490 aaPredicted RBP0.84□□□□□ -2.28
VPS50-212ENST00000476413 KNTC1P50748 2209 aa0.84□□□□□ -2.28
VPS50-212ENST00000476413 ANP32BQ92688 251 aaKnown RBP0.83□□□□□ -2.28
VPS50-212ENST00000476413 CXorf51AA0A1B0GTR3 108 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 ARPC5O15511 151 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 FXYD6P3P58550 94 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 SLC25A26Q70HW3 274 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 SYNJ1O43426 1573 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 MEGF8Q7Z7M0 2845 aa0.82□□□□□ -2.28
VPS50-212ENST00000476413 FRAS1Q86XX4 4008 aa0.81□□□□□ -2.28
VPS50-212ENST00000476413 CCKP06307 115 aa0.81□□□□□ -2.28
VPS50-212ENST00000476413 POLR2JP52435 117 aaKnown RBP0.81□□□□□ -2.28
VPS50-212ENST00000476413 APCP25054 2843 aa0.81□□□□□ -2.28
VPS50-212ENST00000476413 CDK5RAP2Q96SN8 1893 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 TRBV10-1A0A0K0K1A3 114 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 LOC105371267A0A1B0GV96 52 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 PRH1P02810 166 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 RPL37P61927 97 aaKnown RBP0.8□□□□□ -2.28
VPS50-212ENST00000476413 UNQ5815/PRO19632Q6UWF5 114 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 MAGOHBQ96A72 148 aaKnown RBP0.8□□□□□ -2.28
VPS50-212ENST00000476413 ARHGEF10O15013 1369 aa0.8□□□□□ -2.28
VPS50-212ENST00000476413 ESPL1Q14674 2120 aa0.79□□□□□ -2.28
VPS50-212ENST00000476413 SPINK13Q1W4C9 94 aa0.79□□□□□ -2.28
VPS50-212ENST00000476413 BATF3Q9NR55 127 aa0.79□□□□□ -2.28
VPS50-212ENST00000476413 LSM2Q9Y333 95 aaKnown RBP0.79□□□□□ -2.28
VPS50-212ENST00000476413 VIRMAQ69YN4 1812 aaKnown RBP0.78□□□□□ -2.28
VPS50-212ENST00000476413 TRAV17A0A0B4J275 112 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 FXYD1O00168 92 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 TFF1P04155 84 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 CLLU1Q5K131 121 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 PPDPFLQ8WWR9 84 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 TAS2R8Q9NYW2 309 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 UHRF1BP1LA0JNW5 1464 aa0.78□□□□□ -2.28
VPS50-212ENST00000476413 KRTAP2-3P0C7H8 128 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 SPINK7P58062 85 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 SNX29P2Q8IUI4 249 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms