RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 SELENOKQ9Y6D0 94 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 NF1P21359 2839 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 TRAV2A0A0B4J234 112 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 IGHV1-24A0A0C4DH33 117 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 A0A0J9YX75 114 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 KRTDAPP60985 99 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 CACNG7P62955 275 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 DEFB136Q30KP8 78 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 WFDC3Q8IUB2 231 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 OR1N2Q8NGR9 330 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 C16orf95Q9H693 158 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 SSTP61278 116 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 EBLN2Q6P2I7 272 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 OR9G4Q8NGQ1 327 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 OR10AG1Q8NH19 301 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 SCRT2Q9NQ03 307 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 PEMTQ9UBM1 199 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 LAMTOR2Q9Y2Q5 125 aa9.14□□□□□ -0.95
SYNE1-222ENST00000474655 FASNP49327 2511 aaKnown RBP9.14□□□□□ -0.95
SYNE1-222ENST00000474655 KIR2DL5BA0A0G2JN68 375 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 KIR2DL5BA0A0G2JPC4 375 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 CRXO43186 299 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-222ENST00000474655 ZNF688P0C7X2 276 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 RNASE4P34096 147 aaKnown RBP9.13□□□□□ -0.95
SYNE1-222ENST00000474655 KIR3DS1Q14943 382 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 PSMG4Q5JS54 123 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 KIR2DL5AQ8N109 375 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 DPF1Q92782 380 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 AP5S1Q9NUS5 200 aa9.13□□□□□ -0.95
SYNE1-222ENST00000474655 BTF3P20290 206 aaKnown RBP9.12□□□□□ -0.95
SYNE1-222ENST00000474655 DDTP30046 118 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 CKS2P33552 79 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 ANXA2RQ3ZCQ2 193 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 KLHL30-AS1Q8NEE0 82 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 PRO1933Q9H354 126 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 LINC01546A6NGU7 62 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 H3BVH4 76 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 J3KRW8 73 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 CSN3P07498 182 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 LEPP41159 167 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 TFPI2P48307 235 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 FHL3Q13643 280 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 TDRG1Q3Y452 100 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 PRSS3P2Q8NHM4 247 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 DLX4Q92988 240 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-222ENST00000474655 SIGLEC8Q9NYZ4 499 aa9.12□□□□□ -0.95
SYNE1-222ENST00000474655 AGRNO00468 2067 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 SORL1Q92673 2214 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 A8MTW9 85 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 TCF21O43680 179 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 DUSP14O95147 198 aaKnown RBP9.11□□□□□ -0.95
SYNE1-222ENST00000474655 NPYP01303 97 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 IFI27P40305 119 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-222ENST00000474655 ASIPP42127 132 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 HILS1P60008 231 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 PMCHL1Q16048 86 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 FOXI2Q6ZQN5 318 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 DEFB125Q8N687 156 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 LINC01006Q8NI28 216 aa9.11□□□□□ -0.95
SYNE1-222ENST00000474655 C7orf71A4D174 169 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 LEPROTL1O95214 131 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 RNASE3P12724 160 aaKnown RBP9.1□□□□□ -0.95
SYNE1-222ENST00000474655 EVI2AP22794 236 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 SPANXN1Q5VSR9 72 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 FA2HQ7L5A8 372 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 SMIM15Q7Z3B0 74 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 C20orf144Q9BQM9 153 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 TMEM70Q9BUB7 260 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 ANK3Q12955 4377 aaKnown RBP9.1□□□□□ -0.95
SYNE1-222ENST00000474655 MUC4Q99102 2169 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 CUBNO60494 3623 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 HECTD1Q9ULT8 2610 aa9.1□□□□□ -0.95
SYNE1-222ENST00000474655 PRSS47A8MTI9 375 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 NXPH4O95158 308 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 KHDC1LQ5JSQ8 128 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 AMTNQ6UX39 209 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 ZNF418Q8TF45 676 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-222ENST00000474655 RAX2Q96IS3 184 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 MTORP42345 2549 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 A0A096LNJ9 63 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 SMKR1H3BMG3 65 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 GNRH2O43555 120 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 TSPOP30536 169 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 DEFB114Q30KQ6 69 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 DUX3Q96PT4 197 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 VAMP8Q9BV40 100 aa9.09□□□□□ -0.95
SYNE1-222ENST00000474655 SYS1-DBNDD2H3BUS1 97 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 GAS8-AS1O95177 125 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 TNFRSF6BO95407 300 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 NCR2O95944 276 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 S100A4P26447 101 aaKnown RBP9.08□□□□□ -0.96
SYNE1-222ENST00000474655 CDKN1BP46527 198 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 CTAG1AP78358 180 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 FAM159AQ6UWV7 190 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 LINC00173Q6ZV60 143 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 TMEM61Q8N0U2 210 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 HSPB8Q9UJY1 196 aa9.08□□□□□ -0.96
SYNE1-222ENST00000474655 LOC389332A0A1B0GUA5 103 aa9.07□□□□□ -0.96
SYNE1-222ENST00000474655 NDUFA7O95182 113 aa9.07□□□□□ -0.96
SYNE1-222ENST00000474655 CD28P10747 220 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms