RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SMKR1H3BMG3 65 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 IGLC3P0DOY3 106 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 SRD5A1P18405 259 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 ASIPP42127 132 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 SPATA45Q537H7 98 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 TCTEX1D4Q5JR98 221 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 Q6ZSV7 163 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 MAP1LC3AQ9H492 121 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 ZFHX3Q15911 3703 aa7.34□□□□□ -1.23
USP39-214ENST00000474572 KMT2BQ9UMN6 2715 aaPredicted RBP7.34□□□□□ -1.23
USP39-214ENST00000474572 DNAJC9-AS1A6NH13 148 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 LINC01619G3V211 115 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 H3BVH4 76 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 TNFRSF6BO95407 300 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 NCR2O95944 276 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 RNASE3P12724 160 aaKnown RBP7.33□□□□□ -1.24
USP39-214ENST00000474572 LEPP41159 167 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 KIR3DS1Q14943 382 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 LINC01545Q5VT33 79 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 SMIM15Q7Z3B0 74 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 POM121L12Q8N7R1 296 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 NRACQ8N912 160 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 MAP1LC3CQ9BXW4 147 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 CELSR2Q9HCU4 2923 aa7.33□□□□□ -1.24
USP39-214ENST00000474572 FAM208BQ5VWN6 2430 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 SVEP1Q4LDE5 3571 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 CELSR1Q9NYQ6 3014 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 CSPG4Q6UVK1 2322 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 OR4C46A6NHA9 309 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 GAS8-AS1O95177 125 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 HBDP02042 147 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 EVI2AP22794 236 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 SSTP61278 116 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 SNRPD3P62318 126 aaKnown RBP7.32□□□□□ -1.24
USP39-214ENST00000474572 SPANXN1Q5VSR9 72 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 C18orf65Q6ZTR6 163 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 LURAP1LQ8IV03 231 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 OR2K2Q8NGT1 345 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 MRAP2Q96G30 205 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 DUX5Q96PT3 197 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 NXT2Q9NPJ8 142 aaKnown RBP7.32□□□□□ -1.24
USP39-214ENST00000474572 UQCR10Q9UDW1 63 aa7.32□□□□□ -1.24
USP39-214ENST00000474572 CRYBG3Q68DQ2 2970 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 LOC389332A0A1B0GUA5 103 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 C7orf71A4D174 169 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 M0R381 172 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 EREGO14944 169 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 DUSP14O95147 198 aaKnown RBP7.31□□□□□ -1.24
USP39-214ENST00000474572 ZNF688P0C7X2 276 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 RNASE4P34096 147 aaKnown RBP7.31□□□□□ -1.24
USP39-214ENST00000474572 SLURP1P55000 103 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 LGALS9BQ3B8N2 356 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 PSMG4Q5JS54 123 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 LGALS9CQ6DKI2 356 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 AMTNQ6UX39 209 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 FOXI2Q6ZQN5 318 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 WFDC3Q8IUB2 231 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 Q8N8P6 123 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 SNHG12Q9BXW3 62 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 DPH3P1Q9H4G8 78 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 ESM1Q9NQ30 184 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 TMEM160Q9NX00 188 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 PEMTQ9UBM1 199 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 SELENOKQ9Y6D0 94 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 LRRK2Q5S007 2527 aa7.31□□□□□ -1.24
USP39-214ENST00000474572 J3KRW8 73 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 M0R143 59 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 IGLL1P15814 213 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 GATA1P15976 413 aaPredicted RBP7.3□□□□□ -1.24
USP39-214ENST00000474572 S100A4P26447 101 aaKnown RBP7.3□□□□□ -1.24
USP39-214ENST00000474572 MAJINQ3KP22 176 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 ZNF705AQ6ZN79 300 aaPredicted RBP7.3□□□□□ -1.24
USP39-214ENST00000474572 ATOH7Q8N100 152 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 OR9G4Q8NGQ1 327 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 OR1N2Q8NGR9 330 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 C16orf95Q9H693 158 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 ST20Q9HBF5 79 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 KIF25-AS1Q9Y6Z4 181 aa7.3□□□□□ -1.24
USP39-214ENST00000474572 PTPN13Q12923 2485 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 USP9YO00507 2555 aaPredicted RBP7.29□□□□□ -1.24
USP39-214ENST00000474572 GNRH2O43555 120 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 RNASE1P07998 156 aaKnown RBP7.29□□□□□ -1.24
USP39-214ENST00000474572 FCER1GP30273 86 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 TSPOP30536 169 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 CDKN1BP46527 198 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 TFPI2P48307 235 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 FHL3Q13643 280 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 DEFB136Q30KP8 78 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 FAM159AQ6UWV7 190 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 OR11H1Q8NG94 326 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 DPF1Q92782 380 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 C9orf85Q96MD7 179 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 PHLDA3Q9Y5J5 127 aa7.29□□□□□ -1.24
USP39-214ENST00000474572 LINC00315P59091 139 aa7.28□□□□□ -1.24
USP39-214ENST00000474572 KLHL30-AS1Q8NEE0 82 aa7.28□□□□□ -1.24
USP39-214ENST00000474572 DLX4Q92988 240 aaPredicted RBP7.28□□□□□ -1.24
USP39-214ENST00000474572 IFI27L1Q96BM0 104 aa7.28□□□□□ -1.24
USP39-214ENST00000474572 AP1S3Q96PC3 154 aa7.28□□□□□ -1.24
USP39-214ENST00000474572 CSMD2Q7Z408 3487 aa7.28□□□□□ -1.24
USP39-214ENST00000474572 APCP25054 2843 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms