RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ADCYAP1P18509 176 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 PCBD1P61457 104 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 ZNF56Q15929 161 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 ASB16-AS1Q495Z4 193 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 IDO2Q6ZQW0 420 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 OR8I2Q8N0Y5 310 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 C5orf56Q8N8D9 126 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 KRTAP2-4Q9BYR9 128 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 KRTAP2-1Q9BYU5 128 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 MRPL40Q9NQ50 206 aaKnown RBP0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 HSPB11Q9Y547 144 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 PTPRGP23470 1445 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 ARHGAP31Q2M1Z3 1444 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 ASH1LQ9NR48 2969 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 ZCCHC6Q5VYS8 1495 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 ARAP1Q96P48 1450 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 TRAV36DV7A0A075B6V5 113 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 A0A0G2JMM0 328 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 PNMA8CA0A1B0GUJ8 204 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 FXYD1O00168 92 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 DPM2O94777 84 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 SDC4P31431 198 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 RPS28P62857 69 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 PSPHP78330 225 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 OR8B8Q15620 311 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 RHOHQ15669 191 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 IQCJQ1A5X6 159 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 SPINK13Q1W4C9 94 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 HSD17B12Q53GQ0 312 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 OR4S1Q8NGB4 309 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 DMAC1Q96GE9 116 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 KMT2DO14686 5537 aa0.31□□□□□ -2.36
CCDC88A-212ENST00000474059 ZNF462Q96JM2 2506 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 DLEC1Q9Y238 1755 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 A0A1B0GX51 115 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 PHGR1C9JFL3 82 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 MT-ND4LP03901 98 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 SPTBP11277 2137 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 HIST1H1BP16401 226 aaKnown RBP0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 RPL37P61927 97 aaKnown RBP0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 TAC4Q86UU9 113 aa0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 METTL1Q9UBP6 276 aaKnown RBP0.3□□□□□ -2.36
CCDC88A-212ENST00000474059 CD3DP04234 171 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 PAEPP09466 180 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 UNQ5815/PRO19632Q6UWF5 114 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 SLC35B3Q9H1N7 401 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 ATG5Q9H1Y0 275 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 CALML5Q9NZT1 146 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 CPDO75976 1380 aa0.29□□□□□ -2.36
CCDC88A-212ENST00000474059 HELZP42694 1942 aaKnown RBP0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 RBBP6Q7Z6E9 1792 aaKnown RBP0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 DEGS1O15121 323 aa0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 TNFSF15O95150 251 aa0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 POLR2JP52435 117 aaKnown RBP0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 BANF2Q9H503 90 aa0.28□□□□□ -2.36
CCDC88A-212ENST00000474059 BLMP54132 1417 aaPredicted RBP0.28□□□□□ -2.37
CCDC88A-212ENST00000474059 PLXNA2O75051 1894 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 TRAV17A0A0B4J275 112 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 A0A1B0GW64 132 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 C9JAW5 83 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 CCKP06307 115 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 SCTP09683 121 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 PLGLB1Q02325 96 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 KLKP1Q107X0 134 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 TMEM244Q5VVB8 128 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 TMEM91Q6ZNR0 172 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 TSKUQ8WUA8 353 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 HIGD1AQ9Y241 93 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 DNAJC15Q9Y5T4 150 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 MEGF8Q7Z7M0 2845 aa0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 MAP2P11137 1827 aaKnown RBP0.27□□□□□ -2.37
CCDC88A-212ENST00000474059 TRBV10-1A0A0K0K1A3 114 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 OR2H2O95918 312 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 HLA-DRB4P13762 266 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 CMPK1P30085 196 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 TCTE3Q8IZS6 198 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 HLA-DRB4X5D2U9 266 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 ANKRD30AQ9BXX3 1397 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 ZDBF2Q9HCK1 2354 aa0.26□□□□□ -2.37
CCDC88A-212ENST00000474059 CASZ1Q86V15 1759 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 UNC13AQ9UPW8 1703 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 SMIM24O75264 130 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 AKR1D1P51857 326 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 DR1Q01658 176 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 CCDC153Q494R4 210 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 SLC25A26Q70HW3 274 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 SPANXA1Q9NS26 97 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 TMEM14BQ9NUH8 114 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 TAS2R8Q9NYW2 309 aa0.25□□□□□ -2.37
CCDC88A-212ENST00000474059 CCDC171Q6TFL3 1326 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 A0A096LNT2 108 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 BORCS7-ASMTA0A0B4J1R7 106 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 CXorf51AA0A1B0GTR3 108 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 TFF1P04155 84 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 AKAP14Q86UN6 197 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 PPDPFLQ8WWR9 84 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 MAGOHBQ96A72 148 aaKnown RBP0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 SPANXCQ9NY87 97 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 TANC1Q9C0D5 1861 aa0.24□□□□□ -2.37
CCDC88A-212ENST00000474059 APCP25054 2843 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms