RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 INO80EQ8NBZ0 244 aaPredicted RBP10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 RASL10AQ92737 203 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 NDFIP1Q9BT67 221 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 IGHV3-16A0A0C4DH30 117 aa10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 SERF2P84101 59 aa10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 RPL7L1Q6DKI1 246 aaKnown RBP10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 C5orf17Q8NAS9 161 aa10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 ACTR3CQ9C0K3 210 aaPredicted RBP10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 SDF2L1Q9HCN8 221 aa10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 DNAH5Q8TE73 4624 aa10.78□□□□□ -0.68
CCDC88B-205ENST00000472524 TRAV4A0A0B4J268 109 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 SERTM2A0A1B0GWG4 89 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 RNF222A6NCQ9 220 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 M0R2P5 195 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 TCRAP04437 139 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 LINC00315P59091 139 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 LYPD5Q6UWN5 251 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 SUN5Q8TC36 379 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 PCNPQ8WW12 178 aaKnown RBP10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 ASB13Q8WXK3 278 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 TMEM167BQ9NRX6 74 aa10.77□□□□□ -0.69
CCDC88B-205ENST00000472524 BORCS7-ASMTA0A0B4J1R7 106 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 GGTLC3B5MD39 225 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 K7EQD1 137 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 K7EQM0 130 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 CXorf1O96002 111 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 GYPEP15421 78 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 SRIP30626 198 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 SUMO1P63165 101 aaKnown RBP10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 NEGR1Q7Z3B1 354 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 SPATA12Q7Z6I5 190 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 OR4C5Q8NGB2 326 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 KCNS1Q96KK3 526 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 TNFSF18Q9UNG2 199 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 PSG8Q9UQ74 426 aa10.76□□□□□ -0.69
CCDC88B-205ENST00000472524 GCGP01275 180 aa10.75□□□□□ -0.69
CCDC88B-205ENST00000472524 ZNF80P51504 273 aaPredicted RBP10.75□□□□□ -0.69
CCDC88B-205ENST00000472524 PRNTQ86SH4 94 aa10.75□□□□□ -0.69
CCDC88B-205ENST00000472524 OR2T35Q8NGX2 323 aa10.75□□□□□ -0.69
CCDC88B-205ENST00000472524 APOBP04114 4563 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-205ENST00000472524 FLI1Q01543 452 aaPredicted RBP10.74□□□□□ -0.69
CCDC88B-205ENST00000472524 CYB561D1Q8N8Q1 229 aa10.74□□□□□ -0.69
CCDC88B-205ENST00000472524 C11orf21Q9P2W6 132 aa10.74□□□□□ -0.69
CCDC88B-205ENST00000472524 EPDR1Q9UM22 224 aa10.74□□□□□ -0.69
CCDC88B-205ENST00000472524 LOC100131303A0A0U1RQF7 123 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 C9JCJ5 164 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 ORM1P02763 201 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 BTF3P20290 206 aaKnown RBP10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 ZNF726P1Q15940 193 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 ZFP69Q49AA0 526 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 TMEM75Q8N9X5 138 aa10.73□□□□□ -0.69
CCDC88B-205ENST00000472524 CTXND1A0A1B0GTU2 59 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 TAAR5O14804 337 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 IGLV2-11P01706 119 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 KRTAP10-2P60368 255 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 UBE2G2P60604 165 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 RGS21Q2M5E4 152 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 SMUG1Q53HV7 270 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 Q8N1X5 172 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 TXNDC17Q9BRA2 123 aa10.72□□□□□ -0.69
CCDC88B-205ENST00000472524 TRAV34A0A0B4J273 112 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 A0A1W2PRE2 83 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 G3V3Q6 166 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 IFNA7P01567 189 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 PFN1P07737 140 aaKnown RBP10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 FGF8P55075 233 aaPredicted RBP10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 AKR1C8PQ5T2L2 129 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 Q6ZRN7 208 aaPredicted RBP10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 WFDC10BQ8IUB3 73 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 NHLRC2Q8NBF2 726 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 TNFRSF18Q9Y5U5 241 aa10.71□□□□□ -0.69
CCDC88B-205ENST00000472524 FBLL1A6NHQ2 334 aaKnown RBP10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 ARPC5O15511 151 aa10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 GATA1P15976 413 aaPredicted RBP10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 ZNF876PQ49A33 203 aa10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 LINC00479Q96M42 142 aa10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 SCRT2Q9NQ03 307 aa10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 LY96Q9Y6Y9 160 aa10.7□□□□□ -0.7
CCDC88B-205ENST00000472524 TRAV9-2A0A087WT02 112 aa10.69□□□□□ -0.7
CCDC88B-205ENST00000472524 IGHV3-73A0A0B4J1V6 119 aa10.69□□□□□ -0.7
CCDC88B-205ENST00000472524 SAPCD1Q5SSQ6 148 aa10.69□□□□□ -0.7
CCDC88B-205ENST00000472524 DPPA3Q6W0C5 159 aa10.69□□□□□ -0.7
CCDC88B-205ENST00000472524 SMLR1H3BR10 107 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 PEX7O00628 323 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 RS1O15537 224 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 PPT1P50897 306 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 CFAP126Q5VTH2 177 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 C9orf85Q96MD7 179 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 ARL2-SNX15V9GYD0 113 aa10.68□□□□□ -0.7
CCDC88B-205ENST00000472524 PGPEP1LA6NFU8 196 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 FAM74A7A6NL05 159 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 RNASE3P12724 160 aaKnown RBP10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 EVI2AP22794 236 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 ZNF506Q5JVG8 444 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 NFE4Q86UQ8 179 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 SLC25A29Q8N8R3 303 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 CYTL1Q9NRR1 136 aa10.67□□□□□ -0.7
CCDC88B-205ENST00000472524 MAP1LC3B2A6NCE7 125 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 DNAH10OSP0CZ25 163 aa10.66□□□□□ -0.7
CCDC88B-205ENST00000472524 S100A4P26447 101 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms