RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 EIF3GO75821 320 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL7A1-208ENST00000470076 DEFA1P59665 94 aa11.86□□□□□ -0.51
COL7A1-208ENST00000470076 DEFA3P59666 94 aa11.86□□□□□ -0.51
COL7A1-208ENST00000470076 GNRH2O43555 120 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 SH2D6Q7Z4S9 175 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 KCNS1Q96KK3 526 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 WFDC1Q9HC57 220 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 SDF2L1Q9HCN8 221 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 TREM1Q9NP99 234 aa11.85□□□□□ -0.51
COL7A1-208ENST00000470076 RAB2AP61019 212 aa11.84□□□□□ -0.51
COL7A1-208ENST00000470076 C10orf126Q8N4M7 172 aa11.84□□□□□ -0.51
COL7A1-208ENST00000470076 TVP23CQ96ET8 276 aa11.84□□□□□ -0.51
COL7A1-208ENST00000470076 TRAV8-1A0A0A6YYK1 113 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 EPM2AB3EWF7 344 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 F6UZH7 168 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 TYMSP04818 313 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 FUSP35637 526 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL7A1-208ENST00000470076 OR10G9Q8NGN4 311 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 OR10G7Q8NGN6 311 aa11.83□□□□□ -0.52
COL7A1-208ENST00000470076 SERTM2A0A1B0GWG4 89 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 A6NHS1 94 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 CRYGDP07320 174 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 GATA1P15976 413 aaPredicted RBP11.82□□□□□ -0.52
COL7A1-208ENST00000470076 TIRAPP58753 221 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 ASB13Q8WXK3 278 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 NDFIP1Q9BT67 221 aa11.82□□□□□ -0.52
COL7A1-208ENST00000470076 LOC100131303A0A0U1RQF7 123 aa11.81□□□□□ -0.52
COL7A1-208ENST00000470076 HMGB3O15347 200 aaKnown RBP11.81□□□□□ -0.52
COL7A1-208ENST00000470076 XGP55808 180 aa11.81□□□□□ -0.52
COL7A1-208ENST00000470076 GNG5P63218 68 aa11.81□□□□□ -0.52
COL7A1-208ENST00000470076 NHLRC2Q8NBF2 726 aa11.81□□□□□ -0.52
COL7A1-208ENST00000470076 FBLL1A6NHQ2 334 aaKnown RBP11.8□□□□□ -0.52
COL7A1-208ENST00000470076 CIDEAO60543 219 aa11.8□□□□□ -0.52
COL7A1-208ENST00000470076 ARL14EPLP0DKL9 152 aa11.8□□□□□ -0.52
COL7A1-208ENST00000470076 CDC34P49427 236 aaPredicted RBP11.8□□□□□ -0.52
COL7A1-208ENST00000470076 BOLA1Q9Y3E2 137 aa11.8□□□□□ -0.52
COL7A1-208ENST00000470076 IGHV3-38A0A0C4DH36 116 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 K7EQM0 130 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 PFN1P07737 140 aaKnown RBP11.79□□□□□ -0.52
COL7A1-208ENST00000470076 STAG3L2P0CL84 134 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 STAG3L3P0CL85 134 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 PPT1P50897 306 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 ZNF876PQ49A33 203 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 C5orf17Q8NAS9 161 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
COL7A1-208ENST00000470076 TAAR5O14804 337 aa11.78□□□□□ -0.52
COL7A1-208ENST00000470076 TCRAP04437 139 aa11.78□□□□□ -0.52
COL7A1-208ENST00000470076 KRTAP10-1P60331 282 aa11.78□□□□□ -0.52
COL7A1-208ENST00000470076 SGK494Q96LW2 274 aa11.78□□□□□ -0.52
COL7A1-208ENST00000470076 FAT1Q14517 4588 aa11.77□□□□□ -0.52
COL7A1-208ENST00000470076 TRBV6-4A0A1B0GX49 114 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 RHOHQ15669 191 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 LINC01556Q5JQF7 62 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 CFAP126Q5VTH2 177 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 SLC25A29Q8N8R3 303 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 HSD17B11Q8NBQ5 300 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 SUN5Q8TC36 379 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 RAB24Q969Q5 203 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 PRADC1Q9BSG0 188 aa11.77□□□□□ -0.53
COL7A1-208ENST00000470076 PSMG3Q9BT73 122 aaPredicted RBP11.77□□□□□ -0.53
COL7A1-208ENST00000470076 TRAV8-6A0A0B4J262 113 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 RS1O15537 224 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 PSCAO43653 123 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 GCGP01275 180 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 MBP02144 154 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 GCSHP23434 173 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 GCHFRP30047 84 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 ZNF80P51504 273 aaPredicted RBP11.76□□□□□ -0.53
COL7A1-208ENST00000470076 ZFP69Q49AA0 526 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 FRZBQ92765 325 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 C11orf21Q9P2W6 132 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 PSG8Q9UQ74 426 aa11.76□□□□□ -0.53
COL7A1-208ENST00000470076 DMBT1Q9UGM3 2413 aaPredicted RBP11.75□□□□□ -0.53
COL7A1-208ENST00000470076 IBA57-AS1B1ANH7 110 aa11.75□□□□□ -0.53
COL7A1-208ENST00000470076 SERF2P84101 59 aa11.75□□□□□ -0.53
COL7A1-208ENST00000470076 FLI1Q01543 452 aaPredicted RBP11.75□□□□□ -0.53
COL7A1-208ENST00000470076 PTH2Q96A98 100 aa11.75□□□□□ -0.53
COL7A1-208ENST00000470076 C9orf85Q96MD7 179 aa11.75□□□□□ -0.53
COL7A1-208ENST00000470076 TMEM167BQ9NRX6 74 aa11.75□□□□□ -0.53
COL7A1-208ENST00000470076 IGLV2-11P01706 119 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 INAFM2P0DMQ5 153 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 ATP6V0CP27449 155 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 SUMO1P63165 101 aaKnown RBP11.74□□□□□ -0.53
COL7A1-208ENST00000470076 SMUG1Q53HV7 270 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 OR10J3Q5JRS4 329 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 Q5VSD8 79 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 DPPA3Q6W0C5 159 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 CYB561D1Q8N8Q1 229 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 AQP10Q96PS8 301 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 EPDR1Q9UM22 224 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 ALG5Q9Y673 324 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 HERC1Q15751 4861 aa11.74□□□□□ -0.53
COL7A1-208ENST00000470076 LRCOL1A6NCL2 159 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 GGTLC3B5MD39 225 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 CXorf1O96002 111 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 MGST1P10620 155 aaKnown RBP11.73□□□□□ -0.53
COL7A1-208ENST00000470076 SAPCD1Q5SSQ6 148 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 LELP1Q5T871 98 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 VPS13BQ7Z7G8 4022 aa11.73□□□□□ -0.53
COL7A1-208ENST00000470076 TMEM75Q8N9X5 138 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms