RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PRSS3P35030 304 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 RCVRNP35243 200 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 RBP2P50120 134 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 FXYD6P3P58550 94 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 IFITM2Q01629 132 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 PMVKQ15126 192 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 RTL8BQ17RB0 113 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 VMA21Q3ZAQ7 101 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 COA6Q5JTJ3 125 aaKnown RBP2.66□□□□□ -1.98
HMGB1-207ENST00000468384 SFXN4Q6P4A7 337 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 FOXI2Q6ZQN5 318 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-207ENST00000468384 SUMF2Q8NBJ7 301 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 UBAC2Q8NBM4 344 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 OR4S2Q8NH73 311 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 Q8WTZ3 238 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 ABHD14BQ96IU4 210 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 YPEL2Q96QA6 119 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 LINC01587Q99440 93 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 PRO0628Q9UI54 55 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 JPT1Q9UK76 154 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 CARHSP1Q9Y2V2 147 aaKnown RBP2.66□□□□□ -1.98
HMGB1-207ENST00000468384 PRELID3BQ9Y3B1 194 aa2.66□□□□□ -1.98
HMGB1-207ENST00000468384 IGHV3-64A0A075B6Q5 118 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TRGV2A0A075B6R0 118 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TRAV8-2A0A0B4J237 113 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 AIPO00170 330 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 MYL12AP19105 171 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 CXCL2P19875 107 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 POLR2IP36954 125 aaKnown RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 CTRLP40313 264 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 RPL5P46777 297 aaKnown RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 C6orf99Q4VX62 202 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 FAM78BQ5VT40 261 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 SPATA31B1PQ5VZV4 182 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 Q6ZTI0 123 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 OR2T4Q8NH00 348 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 OR1S1Q8NH92 325 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TMEM263Q8WUH6 116 aaKnown RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 CYGBQ8WWM9 190 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TAMM41Q96BW9 452 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 CPNE2Q96FN4 548 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 SMIM8Q96KF7 97 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 DNAJC30Q96LL9 226 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 SIGMAR1Q99720 223 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 RTBDNQ9BSG5 229 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TMEM243Q9BU79 118 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 FAM107BQ9H098 131 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 SLC25A31Q9H0C2 315 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 C21orf62Q9NYP8 219 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 TRAPPC2LQ9UL33 140 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 PSG8Q9UQ74 426 aa2.65□□□□□ -1.99
HMGB1-207ENST00000468384 LSM5Q9Y4Y9 91 aaKnown RBP2.65□□□□□ -1.99
HMGB1-207ENST00000468384 IGHV3-21A0A0B4J1V1 117 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 TMEM269A0A1B0GVZ9 245 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 CREBL2O60519 120 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-207ENST00000468384 PDCD6O75340 191 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 ESDP10768 282 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 PSMB2P49721 201 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 DNAJB13P59910 316 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 DAZ2Q13117 558 aaKnown RBP2.64□□□□□ -1.99
HMGB1-207ENST00000468384 Q56UQ5 140 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 PCOTHQ58A44 107 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 TMEM97Q5BJF2 176 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 TOMM20LQ6UXN7 152 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 OR1L8Q8NGR8 309 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 FXYD5Q96DB9 178 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 OR52B2Q96RD2 323 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 RPP21Q9H633 154 aaKnown RBP2.64□□□□□ -1.99
HMGB1-207ENST00000468384 TAF9BQ9HBM6 251 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 DAZ3Q9NR90 486 aaKnown RBP2.64□□□□□ -1.99
HMGB1-207ENST00000468384 PRR34Q9NV39 138 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 ARMC1Q9NVT9 282 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 DOK5Q9P104 306 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 RBM12B-AS1Q9P1G2 102 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 HHLA3Q9XRX5 114 aa2.64□□□□□ -1.99
HMGB1-207ENST00000468384 A6NN06 94 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 PSPHP1O15172 72 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 ARL6IP5O75915 188 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 IFNA7P01567 189 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 TTRP02766 147 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 LINC00614P0C842 121 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 CRISP2P16562 243 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 RPL27AP46776 148 aaKnown RBP2.63□□□□□ -1.99
HMGB1-207ENST00000468384 LYZP61626 148 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 GINS1Q14691 196 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 TBPL2Q6SJ96 375 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 AMTNQ6UX39 209 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 DAZ4Q86SG3 579 aaKnown RBP2.63□□□□□ -1.99
HMGB1-207ENST00000468384 SMIM20Q8N5G0 67 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 OR10J5Q8NHC4 309 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 DYDC1Q8WWB3 177 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 SLC25A2Q9BXI2 301 aa2.63□□□□□ -1.99
HMGB1-207ENST00000468384 FAM32AQ9Y421 112 aaKnown RBP2.63□□□□□ -1.99
HMGB1-207ENST00000468384 GGTLC3B5MD39 225 aa2.62□□□□□ -1.99
HMGB1-207ENST00000468384 M0R2Z0 102 aa2.62□□□□□ -1.99
HMGB1-207ENST00000468384 FFAR1O14842 300 aa2.62□□□□□ -1.99
HMGB1-207ENST00000468384 MAS1P04201 325 aa2.62□□□□□ -1.99
HMGB1-207ENST00000468384 NBEAP1P0C6P0 100 aa2.62□□□□□ -1.99
HMGB1-207ENST00000468384 TALDO1P37837 337 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms