RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 C8orf49Q96NF6 230 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 TXNDC17Q9BRA2 123 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 CELA1Q9UNI1 258 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 KLF12Q9Y4X4 402 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 IGHV4-4A0A075B6R2 117 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 DEFB131BA0A096LNP1 70 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 TEX48A0A1B0GUV7 120 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 SCO2A0A1W2PP80 73 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 C16orf90A8MZG2 172 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 RGS13O14921 159 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 P0DMU3 169 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 FAM231AP0DMU4 169 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 FAM231CP0DMU5 169 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 BCL2P10415 239 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 AKR1C3P42330 323 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 UBE2G1P62253 170 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 TMEM183BQ1AE95 376 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 FAM222AQ5U5X8 452 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 TEX261Q6UWH6 196 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 EIF4E3Q8N5X7 224 aaKnown RBP8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 DKK2Q9UBU2 259 aa8.44□□□□□ -1.06
SQSTM1-206ENST00000466342 IGHV1OR15-1A0A075B7D0 117 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 TRAV21A0A0B4J279 112 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 TRBV6-1A0A0K0K1D8 114 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 GCGP01275 180 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 S100A9P06702 114 aaKnown RBP8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 TAGLN2P37802 199 aaKnown RBP8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 MEF2BQ02080 365 aaPredicted RBP8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 ANXA2RQ3ZCQ2 193 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 SMUG1Q53HV7 270 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 ZNF680Q8NEM1 530 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 C11orf52Q96A22 123 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 VAX2Q9UIW0 290 aa8.43□□□□□ -1.06
SQSTM1-206ENST00000466342 CBY3A6NI87 242 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 LYRM9A8MSI8 78 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 LTAP01374 205 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 ZNF80P51504 273 aaPredicted RBP8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 SOHLH1Q5JUK2 328 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 MUC21Q5SSG8 566 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 FAM159AQ6UWV7 190 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 C11orf72Q8NBR9 251 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 ZFP30Q9Y2G7 519 aa8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 TIMM8BQ9Y5J9 83 aaPredicted RBP8.42□□□□□ -1.06
SQSTM1-206ENST00000466342 UBR4Q5T4S7 5183 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 SNURFLB1AK76 121 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 PDE6DO43924 150 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 PFN1P07737 140 aaKnown RBP8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 TDRG1Q3Y452 100 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 IBA57Q5T440 356 aaKnown RBP8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 Q6ZR54 194 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 ZNF767PQ75MW2 155 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 COX8CQ7Z4L0 72 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 FAM210BQ96KR6 192 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 NAGKQ9UJ70 344 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 TP53TG3Q9ULZ0 132 aa8.41□□□□□ -1.06
SQSTM1-206ENST00000466342 TCL1AP56279 114 aa8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 DAZ2Q13117 558 aaKnown RBP8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 TMEM183AQ8IXX5 376 aa8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 NDUFAF3Q9BU61 184 aa8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 NOP10Q9NPE3 64 aaKnown RBP8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 GSN-AS1Q9NRJ2 163 aa8.4□□□□□ -1.06
SQSTM1-206ENST00000466342 TRGV11A0A075B6L2 103 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 RBFOX3A6NFN3 312 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 RPL35P42766 123 aaKnown RBP8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 DAD1P61803 113 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 ZNF415Q09FC8 603 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 ZNF506Q5JVG8 444 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 ZC2HC1AQ96GY0 325 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 KCNS1Q96KK3 526 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 DERL1Q9BUN8 251 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 SDF2L1Q9HCN8 221 aa8.39□□□□□ -1.07
SQSTM1-206ENST00000466342 FABP5P3A8MUU1 101 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 TYMSP04818 313 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 BAGE2Q86Y30 109 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 LINC00612Q8N6U2 182 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 NHLRC2Q8NBF2 726 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 MLST8Q9BVC4 326 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 C11orf21Q9P2W6 132 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 DNAH5Q8TE73 4624 aa8.38□□□□□ -1.07
SQSTM1-206ENST00000466342 IGLV2-18A0A075B6J9 118 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 GNRH2O43555 120 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 INAFM2P0DMQ5 153 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 DEFB130BP0DP73 79 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 DEFB130AP0DP74 79 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 CRIP1P50238 77 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 ZNF674Q2M3X9 581 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 TOR2AQ5JU69 321 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 FAM162BQ5T6X4 162 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 C1orf134Q5TEV5 83 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 PCNPQ8WW12 178 aaKnown RBP8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 FAM210AQ96ND0 272 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 MED9Q9NWA0 146 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 MDFICQ9P1T7 246 aa8.37□□□□□ -1.07
SQSTM1-206ENST00000466342 IGKV3D-20A0A0C4DH25 116 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 IGHV3-16A0A0C4DH30 117 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 TMEM250H0YL14 139 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 SPINK4O60575 86 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 SH2D1AO60880 128 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 NDUFS6O75380 124 aaKnown RBP8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 CENPWQ5EE01 88 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms